Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATR_00061G00930
(Amborella trichopoda)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | ATR_00061G00930 | 1 |  |
| Tree-based ortholog | ATR_00061G00930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | ATR_00061G00930 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | 1-to-many | AL1G28890 AL7G01140 | 2 | |
| Tree-based ortholog | 1-to-1 | AL3G29820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G29820 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-many | AT2G21590 AT4G39210 | 2 | |
| Tree-based ortholog | 1-to-1 | AT5G48300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G48300 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-many | BV1G09030 BV9G13230 | 2 | |
| Tree-based ortholog | 1-to-1 | BV9G08470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV9G08470 | 1 | ||
| Brassica rapa | Tree-based ortholog | 1-to-1 | BR07G03260 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR07G03260 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_004G00610 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_008G07780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G07780 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00062G01700 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00136G00730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00136G00730 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR03G10250 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G10250 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-many | CL05G19920 CL06G05700 CL11G14660 | 3 | |
| Tree-based ortholog | 1-to-1 | CL02G03060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G03060 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00661G00040 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00647G00040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00647G00040 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-many | CM00047G02890 CM00059G01280 CM01596G05330 | 3 | |
| Tree-based ortholog | 1-to-1 | CM00066G00500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00066G00500 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0009G10260 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0011G11520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0011G11520 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV2G50570 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G35800 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G35800 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM03G38500 GM04G01350 GM04G03260 ... | 9 | |
| Tree-based ortholog | 1-to-many | GM14G01290 GM02G47460 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM14G01290 GM02G47460 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-many | GR05G24490 GR09G20040 GR10G00870 ... | 4 | |
| Tree-based ortholog | 1-to-many | GR07G16370 GR00G00660 GR01G22450 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR01G22450 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-many | LJ1G043690 LJ1G069700 LJ3G047010 ... | 4 | |
| Tree-based ortholog | 1-to-1 | LJ2G049420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G049420 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD00G359840 MD08G002370 MD12G015580 | 3 | |
| Tree-based ortholog | 1-to-many | MD00G052400 MD17G010720 MD00G030020 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G052400 MD17G010720 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME03081G00020 | 1 | |
| Tree-based ortholog | 1-to-many | ME03805G00050 ME05214G00530 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME05214G00530 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-many | MT3G112070 MT3G116860 MT4G070430 ... | 4 | |
| Tree-based ortholog | 1-to-many | MT5G097010 MT3G082150 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G082150 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-many | OS01G44220 OS05G50380 OS07G13980 | 3 | |
| Tree-based ortholog | 1-to-many | OS09G12660 OS08G25734 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G25734 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL07G03120 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL07G03120 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00036G00820 PP00098G00350 PP00237G00200 ... | 4 | |
| Tree-based ortholog | 1-to-many | PP00002G02010 PP00076G00400 PP00239G00160 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00002G02010 PP00076G00400 PP00239G00160 | 3 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT09G11880 PT14G11000 | 2 | |
| Tree-based ortholog | 1-to-1 | PT14G17180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT14G17180 | 1 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_008G11230 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_003G17430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G17430 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-many | RC30076G00760 RC30131G02070 RC30170G04270 | 3 | |
| Tree-based ortholog | 1-to-1 | RC30005G00320 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30005G00320 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-many | SL01G109790 SL07G019440 | 2 | |
| Tree-based ortholog | 1-to-1 | SL07G056140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL07G056140 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-many | ST01G047210 ST07G011850 | 2 | |
| Tree-based ortholog | 1-to-1 | ST07G023520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST07G023520 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-many | TP1G23890 TP4G00740 TP7G36630 | 3 | |
| Tree-based ortholog | 1-to-1 | TP3G23080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G23080 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-many | TC0001G32650 TC0002G07850 | 2 | |
| Tree-based ortholog | 1-to-1 | TC0001G19550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G19550 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-many | VV03G02750 VV07G10510 | 2 | |
| Tree-based ortholog | 1-to-1 | VV12G10130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV12G10130 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM06G32080 ZM07G05450 | 2 | |
| Tree-based ortholog | 1-to-1 | ZM08G14950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G39790 | 1 |