Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATR_00010G02500
(Amborella trichopoda)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | ATR_00010G02500 | 1 |  |
| Tree-based ortholog | ATR_00010G02500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | ATR_00010G02500 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL4G01350 | 1 | |
| Tree-based ortholog | 1-to-1 | AL4G01350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL4G01350 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT2G22120 | 1 | |
| Tree-based ortholog | 1-to-1 | AT2G22120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G22120 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV6G13540 | 1 | |
| Tree-based ortholog | 1-to-1 | BV6G13540 | 1 | ||
| Anchor point | N/A | BV6G13540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G13540 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-many | BR04G12280 BR09G44170 | 2 | |
| Tree-based ortholog | 1-to-many | BR09G44170 BR04G12280 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR04G12280 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_004G01190 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_004G01190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_004G01190 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-many | CP28217G00020 CP28217G00030 | 2 | |
| Tree-based ortholog | 1-to-1 | CP28217G00020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP28217G00030 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-many | CR12G07520 CR12G07530 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR12G07530 CR12G07520 | 2 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL01G19320 | 1 | |
| Tree-based ortholog | 1-to-1 | CL01G19320 | 1 | ||
| Anchor point | N/A | CL01G19320 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G19320 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00473G00090 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00473G00090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00473G00090 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00007G08170 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00007G08170 | 1 | ||
| Anchor point | N/A | CM00007G08170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00007G08170 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0009G02810 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0009G02810 | 1 | ||
| Anchor point | N/A | EG0009G02810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G02810 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-many | FV6G00880 FV6G00890 | 2 | |
| Tree-based ortholog | 1-to-1 | FV6G00880 | 1 | ||
| Anchor point | N/A | FV6G00880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G06280 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM11G36020 GM18G02420 | 2 | |
| Tree-based ortholog | 1-to-many | GM05G31600 GM18G02420 GM11G36020 | 3 | ||
| Anchor point | N/A | GM05G31600 GM18G02420 GM11G36020 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM18G02420 GM11G36020 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR07G24310 | 1 | |
| Tree-based ortholog | 1-to-1 | GR07G24310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR07G24310 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ3G000150 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G030770 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD00G433810 MD15G026210 | 2 | |
| Tree-based ortholog | 1-to-many | MD00G433810 MD15G026210 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G433810 | 1 | ||
| Manihot esculenta | Orthologous gene family | 1-to-many | ME05140G00010 ME08265G00360 | 2 | |
| Tree-based ortholog | 1-to-many | ME05140G00010 ME08265G00360 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME08265G00360 ME05140G00010 | 2 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT3G087920 | 1 | |
| Tree-based ortholog | 1-to-1 | MT3G087920 | 1 | ||
| Anchor point | N/A | MT3G087920 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G087920 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS11G39130 | 1 | |
| Tree-based ortholog | 1-to-1 | OS11G39130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS11G39130 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-1 | PP00243G00430 | 1 | |
| Tree-based ortholog | 1-to-many | PP00243G00430 PP00028G01320 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00243G00430 | 1 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT05G08150 PT07G08590 | 2 | |
| Tree-based ortholog | 1-to-many | PT07G08590 PT05G08150 | 2 | ||
| Anchor point | N/A | PT07G08590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT05G08150 | 1 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_006G18330 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_006G18330 | 1 | ||
| Anchor point | N/A | PPE_006G18330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G18330 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC28016G00030 | 1 | |
| Tree-based ortholog | 1-to-1 | RC28016G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC28016G00030 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-many | SL04G011570 SL04G054330 | 2 | |
| Tree-based ortholog | 1-to-many | SL04G011570 SL04G054330 | 2 | ||
| Anchor point | N/A | SL04G054330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G054330 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-many | ST04G010390 ST04G022340 | 2 | |
| Tree-based ortholog | 1-to-many | ST04G010390 ST04G022340 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G010390 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP4G01140 | 1 | |
| Tree-based ortholog | 1-to-1 | TP4G01140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G01140 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0001G10530 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0001G10530 | 1 | ||
| Anchor point | N/A | TC0001G10530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G10530 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV07G06040 | 1 | |
| Tree-based ortholog | 1-to-1 | VV07G06040 | 1 | ||
| Anchor point | N/A | VV07G06040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G06040 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM02G44460 ZM04G02620 | 2 | |
| Tree-based ortholog | 1-to-1 | ZM04G02620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G02620 | 1 |