Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATR_00001G00070
(Amborella trichopoda)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | ATR_00001G00070 | 1 |  |
| Tree-based ortholog | ATR_00001G00070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | ATR_00001G00070 ATR_00001G00080 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis lyrata | Tree-based ortholog | 1-to-many | AL7G05870 AL1G21770 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AL7G05870 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | 1-to-many | AT4G35090 AT1G20630 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT4G35090 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-many | BV0G05050 BV0G05020 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BV0G05050 | 1 | ||
| Brassica rapa | Tree-based ortholog | 1-to-many | BR01G03180 BR08G13510 BR03G54580 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | BR01G03180 | 1 | ||
| Capsella rubella | Tree-based ortholog | 1-to-many | CRU_007G04900 CRU_001G19280 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_007G04900 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-many | CP00075G00570 CP00026G01880 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00026G01880 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR09G11950 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CR09G11950 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-many | CL11G12640 CL11G12650 CL08G09200 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL11G12640 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00002G06650 | 1 | |
| Anchor point | N/A | CS00002G06650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00002G06660 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-many | CM00029G04060 CM00029G04070 CM00096G00380 | 3 | |
| Anchor point | N/A | CM00029G04060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00096G00380 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-many | EG0006G14480 EG0006G14470 EG0006G14490 ... | 6 | |
| Anchor point | N/A | EG0006G14470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | EG0006G14480 EG0006G14470 | 2 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV5G40900 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV5G40900 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM14G39810 GM17G38140 GM04G01920 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM14G39810 GM04G01920 GM17G38140 | 3 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR09G18760 GR02G11590 GR03G00280 ... | 4 | |
| Anchor point | N/A | GR03G00280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | GR03G00280 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ1G030830 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ1G030830 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD00G150950 MD00G150890 MD06G000920 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | MD06G000920 MD00G150950 | 2 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME02943G01030 ME08376G00010 | 2 | |
| Anchor point | N/A | ME02943G01030 ME06512G01900 ME07520G03340 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ME06512G01900 | 1 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-1 | MT3G115370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT3G115370 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS02G02400 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS03G03910 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00292G00130 PP00003G01770 PP00223G00410 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | PP00003G01320 PP00422G00060 | 2 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT02G00980 PT05G25160 PT05G10040 ... | 4 | |
| Anchor point | N/A | PT05G10040 PT02G00980 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT02G00980 | 1 | ||
| Prunus persica | Tree-based ortholog | 1-to-many | PPE_005G01200 PPE_005G01190 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_005G01190 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-many | RC29830G00550 RC30170G06850 | 2 | |
| Anchor point | N/A | RC29830G00550 RC30170G06850 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC29830G00550 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL02G082760 SL04G082460 SL01G100640 ... | 4 | |
| Anchor point | N/A | SL02G082760 SL04G082460 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL04G082460 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST02G026140 ST04G035910 ST12G027890 | 3 | |
| Anchor point | N/A | ST04G035910 ST02G026140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST04G035910 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | 1-to-many | TP7G32860 TP1G18330 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP7G32860 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-many | TC0008G05800 TC0001G00600 | 2 | |
| Anchor point | N/A | TC0001G00600 TC0008G05800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0008G05800 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-many | VV04G06230 VV00G02910 VV18G12280 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV18G12260 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM04G41390 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM05G16210 | 1 |