Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATCG00540
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | ATCG00540 | 1 |  |
| Best-Hits-and-Inparalogs(BHI)family | ATCG00540 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-many | ATR_00334G00030 ATR_CG00540 | 2 | |
| Anchor point | N/A | ATR_CG00540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00334G00030 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL2G10060 | 1 | |
| Anchor point | N/A | AL2G10060 AL2G10820 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G10060 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR00G12640 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR00G12640 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CPCG00550 | 1 | |
| Anchor point | N/A | CPCG00550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CPCG00550 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | 1-to-1 | CRCG00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRCG00010 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CSCG00580 | 1 | |
| Anchor point | N/A | CSCG00580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CSCG00580 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CMCG00540 | 1 | |
| Anchor point | N/A | CMCG00540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CMCG00540 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-many | EG0005G09380 EG0005G20050 EGCG00480 | 3 | |
| Anchor point | N/A | EGCG00480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EGCG00480 EG0005G09380 | 2 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM12G36150 GMCG00540 | 2 | |
| Anchor point | N/A | GMCG00540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM12G36150 GMCG00540 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GRCG00540 | 1 | |
| Anchor point | N/A | GR07G24360 GRCG00540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GRCG00540 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJCG00540 | 1 | |
| Anchor point | N/A | LJCG00540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJCG00540 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-1 | MD00G019680 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G019680 | 1 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | MECG00590 | 1 | |
| Anchor point | N/A | MECG00590 ME04355G00070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MECG00590 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT00G15560 | 1 | |
| Anchor point | N/A | MT00G15560 MT4G050860 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT00G15560 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-many | OS01G65902 OS02G24596 OS06G39738 ... | 6 | |
| Anchor point | N/A | OSCG00620 OS08G15280 OS10G21290 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OSCG00620 OS08G15280 OS10G21290 ... | 6 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-1 | PPCG00300 | 1 | |
| Anchor point | N/A | PPCG00300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPCG00300 | 1 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT00G16060 PT16G09420 PTCG00570 | 3 | |
| Anchor point | N/A | PTCG00570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT16G09420 PTCG00570 | 2 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-many | SL01G007380 SL10G045220 SLCG00540 | 3 | |
| Anchor point | N/A | SL01G007380 SLCG00540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | SL01G007380 SLCG00540 | 2 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | STCG00530 | 1 | |
| Anchor point | N/A | STCG00530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | STCG00530 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TCCG00550 | 1 | |
| Anchor point | N/A | TCCG00550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TCCG00550 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-many | VVCG00580 VVMG00050 | 2 | |
| Anchor point | N/A | VVCG00580 VVMG00050 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VVCG00580 VVMG00050 | 2 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM01G36120 | 1 | |
| Anchor point | N/A | ZM01G25170 ZM05G41420 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G36120 | 1 |