Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT5G56680
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT4G17300 AT5G56680 | 2 |  |
| Tree-based ortholog | AT5G56680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT5G56680 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00010G00110 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00010G00460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00010G00460 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL7G25760 | 1 | |
| Tree-based ortholog | 1-to-1 | AL8G22300 | 1 | ||
| Anchor point | N/A | AL8G22300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL8G22300 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV9G09750 | 1 | |
| Tree-based ortholog | 1-to-1 | BV3G07220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV3G07220 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR08G10870 | 1 | |
| Tree-based ortholog | 1-to-many | BR10G09880 BR03G11970 BR10G10330 | 3 | ||
| Anchor point | N/A | BR03G11970 BR10G09880 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR10G09880 | 1 | ||
| Capsella rubella | Tree-based ortholog | 1-to-1 | CRU_008G16740 | 1 | |
| Anchor point | N/A | CRU_008G16740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G16740 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00078G00550 | 1 | |
| Anchor point | N/A | CP00078G00550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00078G00550 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR03G11350 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G11350 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL03G16010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL03G16010 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00053G00480 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00106G00310 | 1 | ||
| Anchor point | N/A | CS00106G00310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00106G00310 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00021G02560 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00025G01720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00025G01720 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0004G16980 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0003G07690 | 1 | ||
| Anchor point | N/A | EG0003G07690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G07690 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G25230 | 1 | |
| Tree-based ortholog | 1-to-1 | FV3G19770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G19770 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM05G04660 GM17G15090 | 2 | |
| Tree-based ortholog | 1-to-many | GM09G16901 GM05G36140 GM08G03500 | 3 | ||
| Anchor point | N/A | GM08G03500 GM05G36140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM08G03500 GM05G36140 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR06G21360 | 1 | |
| Tree-based ortholog | 1-to-1 | GR10G08040 | 1 | ||
| Anchor point | N/A | GR10G08040 GR04G28320 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR10G08040 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ4G022300 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G022300 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD00G371160 MD00G251660 MD03G021380 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD03G021380 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME11581G00500 | 1 | |
| Tree-based ortholog | 1-to-1 | ME09501G00130 | 1 | ||
| Anchor point | N/A | ME09501G00130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME09501G00130 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT4G100920 MT8G102050 | 2 | |
| Tree-based ortholog | 1-to-many | MT7G101050 MT8G102050 | 2 | ||
| Anchor point | N/A | MT8G102050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G102050 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS07G30200 | 1 | |
| Tree-based ortholog | 1-to-1 | OS01G27520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G27520 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL11G02040 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL11G02040 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00028G01280 | 1 | |
| Tree-based ortholog | 1-to-many | PP00056G01000 PP00056G01040 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00056G01000 PP00056G01040 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT07G12980 PT17G02880 | 2 | |
| Tree-based ortholog | 1-to-many | PT18G07000 PT06G15390 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT06G15390 PT18G07000 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_007G08190 | 1 | |
| Tree-based ortholog | 1-to-many | PPE_004G14740 PPE_007G08190 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G14740 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC29912G01160 | 1 | |
| Anchor point | N/A | RC29912G01160 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29912G01160 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-1 | SL10G080710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL10G080710 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-1 | ST10G022480 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST10G022480 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP7G16870 | 1 | |
| Tree-based ortholog | 1-to-1 | TP6G18450 | 1 | ||
| Anchor point | N/A | TP6G18450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G18450 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G24790 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0009G09050 | 1 | ||
| Anchor point | N/A | TC0009G09050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G09050 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV16G01380 | 1 | |
| Tree-based ortholog | 1-to-many | VV16G01380 VV00G20880 VV06G10010 ... | 5 | ||
| Anchor point | N/A | VV11G04050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV11G04050 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM08G08390 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM08G08390 | 1 |