Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT5G23670
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT3G48780 AT3G48790 AT5G23670 | 3 |  |
| Tree-based ortholog | AT5G23670 | 1 | ||
| Anchor point | AT3G48780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT5G23670 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00001G00790 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00001G00790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00001G00790 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL5G17730 AL6G23470 | 2 | |
| Tree-based ortholog | 1-to-1 | AL6G23470 | 1 | ||
| Anchor point | 1-to-many | AL5G17730 AL6G23470 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G23470 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV5G13830 | 1 | |
| Tree-based ortholog | 1-to-1 | BV5G13830 | 1 | ||
| Anchor point | 1-to-1 | BV5G13830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV5G13830 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G23350 BR06G19630 BR06G19660 | 3 | |
| Tree-based ortholog | 1-to-many | BR06G19660 BR01G23350 BR06G19630 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G19660 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_005G14030 CRU_006G20760 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_006G20760 | 1 | ||
| Anchor point | 1-to-many | CRU_006G20760 CRU_005G14030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_006G20760 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00070G00870 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00070G00870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00070G00870 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR04G05210 | 1 | |
| Tree-based ortholog | 1-to-1 | CR04G05210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR04G05210 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL06G18730 | 1 | |
| Tree-based ortholog | 1-to-1 | CL06G18730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G18730 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00307G00110 CS00307G00120 | 2 | |
| Tree-based ortholog | 1-to-many | CS00307G00110 CS00307G00120 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00307G00110 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00089G00220 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00089G00220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00089G00220 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0011G18200 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0011G18200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0011G18200 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV6G51630 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G51630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G51630 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM02G07250 GM16G26210 | 2 | |
| Tree-based ortholog | 1-to-many | GM02G07250 GM16G26210 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM16G26210 GM02G07250 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR08G20960 | 1 | |
| Tree-based ortholog | 1-to-1 | GR08G20960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR08G20960 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G003190 | 1 | |
| Malus domestica | Orthologous gene family | many-to-many | MD09G000440 MD17G000320 | 2 | |
| Tree-based ortholog | 1-to-many | MD09G000440 MD17G000320 MD11G005480 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD09G000440 MD17G000320 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME01701G00570 ME05432G00170 ME09876G00670 | 3 | |
| Tree-based ortholog | 1-to-many | ME05432G00170 ME01701G00570 ME09876G00670 | 3 | ||
| Anchor point | 1-to-1 | ME09876G00670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME01701G00570 ME09876G00670 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT6G033290 | 1 | |
| Tree-based ortholog | 1-to-1 | MT6G033290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT6G033290 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G70360 OS01G70370 OS01G70380 ... | 4 | |
| Tree-based ortholog | 1-to-many | OS11G31640 OS01G70380 OS01G70360 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS11G31640 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL01G02690 | 1 | |
| Tree-based ortholog | 1-to-1 | OL01G02690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL01G02690 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00377G00100 | 1 | |
| Tree-based ortholog | 1-to-1 | PP00377G00100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00377G00100 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT12G10450 PT15G10380 | 2 | |
| Tree-based ortholog | 1-to-many | PT12G10450 PT15G10380 | 2 | ||
| Anchor point | 1-to-1 | PT15G10380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT12G10450 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_003G28850 PPE_005G15210 | 2 | |
| Tree-based ortholog | 1-to-many | PPE_003G28850 PPE_005G15210 | 2 | ||
| Anchor point | 1-to-1 | PPE_005G15210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G15210 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30131G01460 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30131G01460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30131G01460 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL03G098220 SL06G030590 SL06G072320 | 3 | |
| Tree-based ortholog | 1-to-many | SL06G030590 SL06G072320 SL03G098220 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G098220 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST03G022890 ST06G028660 | 2 | |
| Tree-based ortholog | 1-to-many | ST03G006480 ST06G028660 ST03G022890 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G022890 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP5G13240 | 1 | |
| Tree-based ortholog | 1-to-1 | TP5G13240 | 1 | ||
| Anchor point | 1-to-1 | TP5G13240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G13240 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0003G13970 TC0004G04440 | 2 | |
| Tree-based ortholog | 1-to-many | TC0004G04440 TC0003G13970 | 2 | ||
| Anchor point | 1-to-1 | TC0003G13970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G13970 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV14G13870 VV17G08810 | 2 | |
| Tree-based ortholog | 1-to-many | VV14G13870 VV17G08810 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV17G08810 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM02G17350 ZM02G42500 ZM04G05410 ... | 4 | |
| Tree-based ortholog | 1-to-many | ZM01G21560 ZM07G25870 ZM09G19830 ... | 9 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM04G05410 ZM02G42500 | 2 |