Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT4G24610
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT4G24610 AT5G65440 | 2 |  |
| Tree-based ortholog | AT4G24610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT4G24610 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00061G00770 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00135G00180 | 1 | ||
| Anchor point | N/A | ATR_00135G00180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00135G00180 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL6G10170 AL7G17530 AL8G32250 | 3 | |
| Tree-based ortholog | 1-to-1 | AL7G17530 | 1 | ||
| Anchor point | N/A | AL7G17530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G17530 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV6G05490 | 1 | |
| Tree-based ortholog | 1-to-1 | BV1G09850 | 1 | ||
| Anchor point | N/A | BV1G09850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G09850 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G14620 BR03G48030 BR05G13440 ... | 5 | |
| Tree-based ortholog | 1-to-1 | BR01G14620 | 1 | ||
| Anchor point | N/A | BR03G48030 BR01G14620 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR01G14620 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_007G15570 CRU_008G07790 CRU_008G25510 | 3 | |
| Tree-based ortholog | 1-to-1 | CRU_007G15570 | 1 | ||
| Anchor point | N/A | CRU_007G15570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G15570 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00055G00400 CP00136G00810 | 2 | |
| Tree-based ortholog | 1-to-1 | CP00309G00020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00309G00020 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR06G07700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR06G07700 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL01G18720 CL11G08650 | 2 | |
| Tree-based ortholog | 1-to-1 | CL11G08650 | 1 | ||
| Anchor point | N/A | CL01G18720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G08650 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00059G00380 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00059G00380 | 1 | ||
| Anchor point | N/A | CS00059G00380 CS00004G02800 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00059G00380 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00007G07530 CM00020G00130 | 2 | |
| Tree-based ortholog | 1-to-1 | CM01596G02470 | 1 | ||
| Anchor point | N/A | CM01596G02470 CM00007G07530 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM01596G02470 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0011G11480 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0006G03530 | 1 | ||
| Anchor point | N/A | EG0006G03530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G03530 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G26360 | 1 | |
| Tree-based ortholog | 1-to-1 | FV5G20900 | 1 | ||
| Anchor point | N/A | FV5G20900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G20900 | 1 | ||
| Glycine max | Orthologous gene family | many-to-1 | GM02G47931 | 1 | |
| Tree-based ortholog | 1-to-many | GM02G37600 GM14G35890 | 2 | ||
| Anchor point | N/A | GM14G35890 GM02G37600 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM14G35890 GM02G37600 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR01G22530 GR07G23350 | 2 | |
| Tree-based ortholog | 1-to-1 | GR09G23070 | 1 | ||
| Anchor point | N/A | GR09G23070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G23070 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ1G002540 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ1G002540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G050200 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G265330 MD09G010070 MD15G030120 | 3 | |
| Tree-based ortholog | 1-to-many | MD00G428450 MD00G015090 MD15G030120 | 3 | ||
| Anchor point | N/A | MD15G030120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD15G030120 MD00G015090 MD00G428450 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME03283G00030 | 1 | |
| Tree-based ortholog | 1-to-1 | ME06916G01950 | 1 | ||
| Anchor point | N/A | ME06916G01950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06916G01950 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT5G098710 | 1 | |
| Tree-based ortholog | 1-to-1 | MT5G065900 | 1 | ||
| Anchor point | N/A | MT5G065900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G065900 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS02G10490 OS02G52280 | 2 | |
| Tree-based ortholog | 1-to-1 | OS02G52280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G52280 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL12G03170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL12G03170 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00006G00050 PP00016G00240 PP00073G00640 | 3 | |
| Tree-based ortholog | 1-to-many | PP00073G00640 PP00016G00240 PP00006G00050 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00006G00050 PP00016G00240 PP00073G00640 | 3 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT14G17200 | 1 | |
| Tree-based ortholog | 1-to-1 | PT02G10410 | 1 | ||
| Anchor point | N/A | PT02G10410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT02G10410 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_003G17380 PPE_006G20390 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_001G58680 | 1 | ||
| Anchor point | N/A | PPE_001G58680 PPE_006G20390 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G58680 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC27749G00140 RC30005G00100 | 2 | |
| Tree-based ortholog | 1-to-1 | RC29908G02790 | 1 | ||
| Anchor point | N/A | RC27749G00140 RC29908G02790 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29908G02790 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL07G056060 SL11G010490 | 2 | |
| Tree-based ortholog | 1-to-1 | SL04G076100 | 1 | ||
| Anchor point | N/A | SL04G076100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G076100 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST07G023580 ST11G009200 | 2 | |
| Tree-based ortholog | 1-to-1 | ST04G029540 | 1 | ||
| Anchor point | N/A | ST04G029540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G029540 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP2G28520 TP6G32990 TP7G22600 | 3 | |
| Tree-based ortholog | 1-to-1 | TP7G22600 | 1 | ||
| Anchor point | N/A | TP2G28520 TP7G22600 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G22600 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0008G06650 | 1 | |
| Anchor point | N/A | TC0008G06650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G06650 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV00G06760 | 1 | |
| Tree-based ortholog | 1-to-1 | VV18G04370 | 1 | ||
| Anchor point | N/A | VV18G04370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G04370 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM05G41130 | 1 | |
| Tree-based ortholog | 1-to-1 | ZM05G41130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM05G41130 | 1 |