Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT4G13940
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT3G23810 AT4G13940 | 2 |  |
| Anchor point | AT3G23810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT4G13940 | 1 | ||
| Tree-based ortholog | AT4G13940 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00013G02750 | 1 | |
| Anchor point | 1-to-1 | ATR_00013G02750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00013G02750 | 1 | ||
| Tree-based ortholog | 1-to-1 | ATR_00013G02750 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL3G26670 AL7G30680 | 2 | |
| Anchor point | 1-to-many | AL7G30680 AL3G26670 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL7G30680 | 1 | ||
| Tree-based ortholog | 1-to-1 | AL7G30680 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV3G10910 | 1 | |
| Anchor point | 1-to-1 | BV3G10910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV3G10910 | 1 | ||
| Tree-based ortholog | 1-to-1 | BV3G10910 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G26820 BR03G37660 BR04G06630 ... | 5 | |
| Anchor point | 1-to-many | BR07G04760 BR04G06630 BR03G37660 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR04G06630 | 1 | ||
| Tree-based ortholog | 1-to-many | BR03G37660 BR01G26820 BR07G04760 ... | 5 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G23090 CRU_007G27330 | 2 | |
| Anchor point | 1-to-many | CRU_003G23090 CRU_007G27330 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_007G27330 | 1 | ||
| Tree-based ortholog | 1-to-1 | CRU_007G27330 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00157G00450 | 1 | |
| Anchor point | 1-to-1 | CP00157G00450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00157G00450 | 1 | ||
| Tree-based ortholog | 1-to-many | CP00083G00090 CP00083G00060 CP00157G00450 ... | 4 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR03G13440 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G13440 | 1 | ||
| Tree-based ortholog | 1-to-1 | CR03G13440 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL05G03410 CL06G07820 | 2 | |
| Anchor point | 1-to-many | CL05G03410 CL06G07820 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G07820 | 1 | ||
| Tree-based ortholog | 1-to-many | CL05G03410 CL06G07820 | 2 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00527G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00527G00010 | 1 | ||
| Tree-based ortholog | 1-to-many | CS11401G00010 CS00527G00010 | 2 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00006G03850 CM00043G00960 | 2 | |
| Anchor point | 1-to-many | CM00043G00960 CM00006G03850 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00043G00960 | 1 | ||
| Tree-based ortholog | 1-to-many | CM00006G03850 CM00043G00960 | 2 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0004G02070 EG0008G21710 EG0008G25720 ... | 7 | |
| Anchor point | 1-to-1 | EG0008G21710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G02070 | 1 | ||
| Tree-based ortholog | 1-to-many | EG0004G02070 EG0008G21710 EG0008G25740 ... | 7 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV4G17200 | 1 | |
| Anchor point | 1-to-1 | FV4G17200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV4G17200 | 1 | ||
| Tree-based ortholog | 1-to-1 | FV4G17200 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM05G28480 GM08G11480 GM11G36620 | 3 | |
| Anchor point | 1-to-many | GM11G36620 GM05G28480 GM08G11480 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM11G36620 | 1 | ||
| Tree-based ortholog | 1-to-1 | GM11G36620 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR03G10850 GR05G02770 GR06G22390 ... | 4 | |
| Anchor point | 1-to-many | GR05G02770 GR11G15400 GR06G22390 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR05G02770 GR06G22390 | 2 | ||
| Tree-based ortholog | 1-to-many | GR03G10850 GR05G02770 GR06G22390 ... | 4 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ6G002670 | 1 | |
| Anchor point | 1-to-1 | LJ6G002670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G002670 | 1 | ||
| Tree-based ortholog | 1-to-1 | LJ6G002670 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G355770 MD09G014040 | 2 | |
| Anchor point | 1-to-1 | MD09G014040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G355770 | 1 | ||
| Tree-based ortholog | 1-to-many | MD00G321800 MD00G057410 MD00G262230 ... | 8 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME02421G00890 ME03332G01010 | 2 | |
| Anchor point | 1-to-many | ME03332G01010 ME02421G00890 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME03332G01010 ME02421G00890 | 2 | ||
| Tree-based ortholog | 1-to-many | ME03332G01010 ME02421G00890 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT3G084340 MT8G083090 | 2 | |
| Anchor point | 1-to-many | MT3G084340 MT8G083090 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G084340 | 1 | ||
| Tree-based ortholog | 1-to-many | MT3G084340 MT8G083090 | 2 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS11G26850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS11G26850 | 1 | ||
| Tree-based ortholog | 1-to-1 | OS11G26850 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL09G02470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL09G02470 | 1 | ||
| Tree-based ortholog | 1-to-1 | OL09G02470 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00020G01050 PP00020G01360 PP00020G01400 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00020G01400 PP00020G01360 PP00020G01050 | 3 | ||
| Tree-based ortholog | 1-to-1 | PP00020G01450 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G32050 PT17G05940 | 2 | |
| Anchor point | 1-to-many | PT01G32050 PT17G05940 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT01G32050 PT17G05940 | 2 | ||
| Tree-based ortholog | 1-to-1 | PT01G32050 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_001G15910 | 1 | |
| Anchor point | 1-to-1 | PPE_001G15910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G15910 | 1 | ||
| Tree-based ortholog | 1-to-1 | PPE_001G15910 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29629G00850 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29629G00850 | 1 | ||
| Tree-based ortholog | 1-to-1 | RC29629G00850 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL09G092380 SL09G092390 SL12G098500 | 3 | |
| Anchor point | 1-to-many | SL12G098500 SL09G092380 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL12G098500 | 1 | ||
| Tree-based ortholog | 1-to-many | SL12G098500 SL05G032820 SL09G092380 ... | 4 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST09G028780 ST09G028800 ST12G030260 | 3 | |
| Anchor point | 1-to-many | ST09G028780 ST12G030260 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST12G030260 | 1 | ||
| Tree-based ortholog | 1-to-1 | ST09G028790 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP3G21520 TP7G11740 | 2 | |
| Anchor point | 1-to-many | TP3G21520 TP7G11740 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G11740 | 1 | ||
| Tree-based ortholog | 1-to-many | TP3G21520 TP7G11740 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0003G12340 TC0004G19980 | 2 | |
| Anchor point | 1-to-1 | TC0004G19980 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0004G19980 | 1 | ||
| Tree-based ortholog | 1-to-many | TC0003G12340 TC0004G19980 | 2 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV05G07280 VV17G00420 | 2 | |
| Anchor point | 1-to-1 | VV05G07280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV05G07280 VV17G00420 | 2 | ||
| Tree-based ortholog | 1-to-many | VV17G00420 VV05G07280 | 2 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM02G22420 ZM04G05250 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G05250 | 1 | ||
| Tree-based ortholog | 1-to-many | ZM04G05250 ZM02G22420 | 2 |