Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT4G11680
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT4G11680 | 1 |  |
| Tree-based ortholog | AT4G11680 | 1 | ||
| Anchor point | AT1G12760 AT3G61180 AT1G63170 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT4G11680 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00069G00390 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00069G00390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00069G00390 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-many | AL2G02120 AL6G34600 | 2 | |
| Tree-based ortholog | 1-to-1 | AL6G34600 | 1 | ||
| Anchor point | many-to-many | AL5G31840 AL6G34600 AL1G13340 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL6G34600 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV1G07660 | 1 | |
| Tree-based ortholog | 1-to-1 | BV1G07660 | 1 | ||
| Anchor point | many-to-1 | BV5G07820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G07660 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR00G12770 | 1 | |
| Tree-based ortholog | 1-to-1 | BR00G12770 | 1 | ||
| Anchor point | many-to-many | BR09G12980 BR04G27240 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR00G12770 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_006G29560 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_006G29560 | 1 | ||
| Anchor point | many-to-many | CRU_004G27430 CRU_002G01650 CRU_001G11880 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_006G29560 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00074G00600 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00002G01820 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR12G05330 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR11G03690 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL10G03250 | 1 | |
| Anchor point | many-to-1 | CL10G03250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G02040 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00040G00100 | 1 | |
| Anchor point | many-to-1 | CS00040G00100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00040G00100 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00021G03410 | 1 | |
| Anchor point | many-to-1 | CM00021G03410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00021G03410 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0004G15470 | 1 | |
| Anchor point | many-to-1 | EG0004G15470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G15470 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV5G02030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G02030 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM11G02830 GM01G42630 GM05G03430 ... | 4 | |
| Anchor point | many-to-many | GM11G02830 GM01G42630 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM05G03430 GM17G13980 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR07G02250 GR04G20860 GR08G24430 ... | 4 | |
| Anchor point | many-to-many | GR03G16100 GR07G09630 GR07G02250 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR03G16100 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ2G035840 | 1 | |
| Anchor point | many-to-1 | LJ2G035840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G035840 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-1 | MD00G281480 | 1 | |
| Tree-based ortholog | 1-to-1 | MD00G281480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD14G009400 | 1 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-1 | ME07035G00210 | 1 | |
| Anchor point | many-to-many | ME07035G00210 ME04882G00230 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME07035G00210 | 1 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-many | MT5G010720 MT4G102870 | 2 | |
| Anchor point | many-to-1 | MT5G010720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G102870 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS02G45240 | 1 | |
| Tree-based ortholog | 1-to-1 | OS07G27950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G45240 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL16G00600 | 1 | |
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00013G01060 PP00399G00070 | 2 | |
| Tree-based ortholog | 1-to-many | PP00013G01060 PP00399G00070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00399G00070 PP00013G01060 | 2 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-1 | PT03G12330 | 1 | |
| Anchor point | many-to-1 | PT03G12330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT03G12330 | 1 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_005G10160 | 1 | |
| Anchor point | many-to-1 | PPE_005G10160 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G10160 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC30190G03220 | 1 | |
| Anchor point | many-to-many | RC30190G03220 RC30174G02280 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30190G03220 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL01G091600 SL05G051040 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL05G051040 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST01G030760 ST05G023410 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST05G023410 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | 1-to-1 | TP6G05790 | 1 | |
| Anchor point | many-to-many | TP1G11320 TP5G02190 TP2G01410 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G05790 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0003G26920 | 1 | |
| Anchor point | many-to-1 | TC0003G26920 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G26920 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV02G07030 | 1 | |
| Anchor point | many-to-1 | VV02G07030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV15G07940 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM10G22120 ZM10G22880 | 2 | |
| Tree-based ortholog | 1-to-many | ZM07G07980 ZM02G27930 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM10G22120 ZM10G22880 | 2 |