Integrative Orthology Viewer: AT3G58810 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT2G46800 AT3G58810 | 2 | |
Tree-based ortholog | AT3G58810 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G58810 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00069G00810 | 1 | |
Tree-based ortholog | 1-to-1 | ATR_00069G00810 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00069G00810 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL4G34970 AL5G29420 | 2 | |
Tree-based ortholog | 1-to-1 | AL5G29420 | 1 | ||
Anchor point | N/A | AL5G29420 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G29420 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-1 | BV1G04140 | 1 | |
Tree-based ortholog | 1-to-1 | BV1G04140 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G04140 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR03G22800 BR04G27840 BR05G00980 | 3 | |
Tree-based ortholog | 1-to-many | BR05G14040 BR05G00980 BR04G27840 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BR03G22800 BR04G27840 | 2 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_004G28420 CRU_005G27280 | 2 | |
Tree-based ortholog | 1-to-1 | CRU_005G24230 | 1 | ||
Anchor point | N/A | CRU_005G24230 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G24230 | 1 | ||
Carica papaya | Orthologous gene family | many-to-many | CP00037G01030 CP00057G00830 | 2 | |
Tree-based ortholog | 1-to-many | CP00057G00830 CP00037G01030 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00037G01030 | 1 | ||
Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR03G00700 | 1 | |
Tree-based ortholog | 1-to-1 | CR03G00700 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G00700 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-1 | CL06G00910 | 1 | |
Tree-based ortholog | 1-to-1 | CL06G00910 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G00910 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00001G05110 CS00009G03210 | 2 | |
Tree-based ortholog | 1-to-many | CS00001G05110 CS00009G03210 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00009G03210 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-1 | CM00052G02320 | 1 | |
Tree-based ortholog | 1-to-1 | CM00052G02320 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00052G02320 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0004G13130 EG0005G09120 EG0005G09140 ... | 7 | |
Tree-based ortholog | 1-to-many | EG0005G09140 EG0005G09190 EG0005G09160 ... | 10 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0005G09180 EG0005G09160 EG0005G09190 ... | 6 | ||
Fragaria vesca | Orthologous gene family | many-to-1 | FV7G04220 | 1 | |
Tree-based ortholog | 1-to-many | FV7G04220 FV0G41530 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV7G04220 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM07G05510 GM16G02030 | 2 | |
Tree-based ortholog | 1-to-many | GM16G02030 GM07G05510 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM07G05510 GM16G02030 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR03G07380 GR04G12840 GR08G13160 | 3 | |
Tree-based ortholog | 1-to-many | GR08G13160 GR04G12840 GR03G07380 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR03G07380 | 1 | ||
Lotus japonicus | Orthologous gene family | many-to-1 | LJ3G035100 | 1 | |
Tree-based ortholog | 1-to-many | LJ3G035100 LJ1G075090 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G035100 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G428590 MD07G014530 MD16G010540 | 3 | |
Tree-based ortholog | 1-to-many | MD14G013270 MD07G014530 MD16G010540 ... | 9 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD16G010540 MD00G428590 | 2 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME00977G00240 ME03581G00130 ME07571G00140 | 3 | |
Tree-based ortholog | 1-to-many | ME07571G00140 ME03581G00130 ME00977G00240 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME00977G00240 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT2G036390 MT8G024240 | 2 | |
Tree-based ortholog | 1-to-many | MT8G024240 MT2G036390 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G036390 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS05G03780 | 1 | |
Tree-based ortholog | 1-to-1 | OS05G03780 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS05G03780 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00030G01660 PP00102G00300 | 2 | |
Tree-based ortholog | 1-to-1 | PP00030G01660 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00102G00300 | 1 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT01G45090 PT02G18010 PT11G15060 ... | 4 | |
Tree-based ortholog | 1-to-many | PT14G10620 PT02G18010 PT01G45090 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT14G10620 PT02G18010 | 2 | ||
Prunus persica | Orthologous gene family | many-to-1 | PPE_002G19190 | 1 | |
Tree-based ortholog | 1-to-many | PPE_002G19190 PPE_005G14220 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G14220 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-1 | RC30076G00190 | 1 | |
Tree-based ortholog | 1-to-many | RC30068G00990 RC30076G00190 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30076G00190 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-1 | SL07G007060 | 1 | |
Tree-based ortholog | 1-to-1 | SL07G007060 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL07G007060 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST07G007810 ST07G007850 | 2 | |
Tree-based ortholog | 1-to-many | ST07G007850 ST07G007810 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST07G007810 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP4G28830 TP5G01410 | 2 | |
Tree-based ortholog | 1-to-many | TP5G01410 TP4G28830 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G28830 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G21590 | 1 | |
Tree-based ortholog | 1-to-many | TC0001G33080 TC0003G21590 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G21590 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-1 | VV02G05940 | 1 | |
Tree-based ortholog | 1-to-1 | VV02G05940 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV02G05940 | 1 | ||
Zea mays | Orthologous gene family | many-to-1 | ZM08G20710 | 1 | |
Tree-based ortholog | 1-to-many | ZM08G20710 ZM03G35040 ZM06G03540 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM08G20710 | 1 |