Integrative Orthology Viewer: AT3G52930 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT2G36460 AT3G52930 AT4G26520 ... | 5 | |
Tree-based ortholog | AT3G52930 | 1 | ||
Anchor point | AT2G36460 AT5G03690 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G52930 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00040G02030 ATR_00061G01550 | 2 | |
Tree-based ortholog | 1-to-1 | ATR_00040G02030 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00040G02030 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL4G21930 AL5G22850 AL7G15540 ... | 4 | |
Tree-based ortholog | 1-to-1 | AL5G22850 | 1 | ||
Anchor point | many-to-many | AL5G22850 AL4G21930 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G22850 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV4G04570 BV7G18100 | 2 | |
Tree-based ortholog | 1-to-1 | BV7G18100 | 1 | ||
Anchor point | many-to-1 | BV7G18100 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV7G18100 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR01G16930 BR02G01580 BR04G21840 ... | 7 | |
Tree-based ortholog | 1-to-many | BR09G34280 BR06G09760 | 2 | ||
Anchor point | many-to-many | BR06G09760 BR04G21840 BR09G34280 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G01580 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_004G17670 CRU_005G18260 CRU_006G02560 ... | 5 | |
Tree-based ortholog | 1-to-1 | CRU_005G18260 | 1 | ||
Anchor point | many-to-many | CRU_004G17670 CRU_005G18260 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G18260 | 1 | ||
Carica papaya | Orthologous gene family | many-to-many | CP00012G01040 CP00119G00480 | 2 | |
Tree-based ortholog | 1-to-1 | CP00119G00480 | 1 | ||
Anchor point | many-to-1 | CP00006G02120 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00119G00480 | 1 | ||
Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR01G01660 | 1 | |
Tree-based ortholog | 1-to-many | CR02G10660 CR02G04580 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR01G01660 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-many | CL04G09680 CL10G17350 | 2 | |
Tree-based ortholog | 1-to-1 | CL10G17350 | 1 | ||
Anchor point | many-to-many | CL10G17350 CL04G09680 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G09680 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-1 | CS00056G00390 | 1 | |
Tree-based ortholog | 1-to-1 | CS06686G00020 | 1 | ||
Anchor point | many-to-1 | CS00056G00390 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00056G00390 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00019G01060 CM00068G00650 | 2 | |
Tree-based ortholog | 1-to-1 | CM00011G03680 | 1 | ||
Anchor point | many-to-many | CM00068G00650 CM00011G03680 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00068G00650 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0001G12590 EG0002G32700 EG0006G16350 ... | 4 | |
Tree-based ortholog | 1-to-many | EG0011G17080 EG0001G12590 | 2 | ||
Anchor point | many-to-many | EG0011G17080 EG0001G12590 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0011G17080 EG0001G12590 | 2 | ||
Fragaria vesca | Orthologous gene family | many-to-many | FV6G19050 FV6G19060 | 2 | |
Tree-based ortholog | 1-to-many | FV6G19060 FV6G19050 | 2 | ||
Anchor point | many-to-1 | FV6G19050 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | FV6G19060 FV6G19050 | 2 | ||
Glycine max | Orthologous gene family | many-to-many | GM02G38730 GM02G47280 GM03G34950 ... | 7 | |
Tree-based ortholog | 1-to-many | GM02G38730 GM14G36850 | 2 | ||
Anchor point | many-to-many | GM10G07710 GM13G21540 GM03G34950 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM14G36850 GM02G38730 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR02G24210 GR09G40740 GR09G40750 ... | 4 | |
Tree-based ortholog | 1-to-many | GR09G40740 GR09G40750 GR02G24210 | 3 | ||
Anchor point | many-to-many | GR09G40740 GR02G24210 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR09G40740 GR09G40750 | 2 | ||
Lotus japonicus | Orthologous gene family | many-to-many | LJ2G049070 LJ5G013040 | 2 | |
Tree-based ortholog | 1-to-1 | LJ5G013040 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G013040 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G269320 MD00G518460 MD03G002760 ... | 4 | |
Tree-based ortholog | 1-to-many | MD00G062610 MD00G304980 MD00G306060 | 3 | ||
Anchor point | many-to-1 | MD14G001120 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD14G001120 MD11G011390 | 2 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME00131G00030 ME02960G00060 ME03569G00200 ... | 5 | |
Tree-based ortholog | 1-to-many | ME00131G00030 ME06550G00420 | 2 | ||
Anchor point | many-to-many | ME06550G00420 ME05859G00370 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME06550G00420 ME00131G00030 | 2 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT1G061050 MT5G069050 MT5G069055 ... | 4 | |
Tree-based ortholog | 1-to-many | MT5G069055 MT5G069050 | 2 | ||
Anchor point | many-to-many | MT7G103920 MT1G061050 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G069055 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G67860 OS05G33380 OS06G40640 ... | 5 | |
Tree-based ortholog | 1-to-many | OS10G08022 OS05G33380 OS01G67860 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS10G08022 OS05G33380 OS01G67860 | 3 | ||
Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL03G00680 | 1 | |
Tree-based ortholog | 1-to-1 | OL03G00680 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL03G00680 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00039G01050 PP00076G00640 PP00089G00660 ... | 4 | |
Tree-based ortholog | 1-to-many | PP00104G00410 PP00089G00660 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00104G00410 PP00089G00660 | 2 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT01G46810 PT06G16570 PT11G16500 ... | 4 | |
Tree-based ortholog | 1-to-many | PT06G16570 PT18G09010 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT18G09010 | 1 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_006G04330 PPE_006G11790 PPE_007G13860 ... | 4 | |
Tree-based ortholog | 1-to-many | PPE_007G13870 PPE_007G13860 | 2 | ||
Anchor point | many-to-1 | PPE_007G13860 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G13870 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-many | RC29092G00190 RC29988G00040 RC30154G00320 | 3 | |
Tree-based ortholog | 1-to-1 | RC29092G00190 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29092G00190 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL07G065900 SL10G083570 | 2 | |
Tree-based ortholog | 1-to-1 | SL10G083570 | 1 | ||
Anchor point | many-to-1 | SL10G083570 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL10G083570 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST07G027930 ST09G011020 ST10G025590 | 3 | |
Tree-based ortholog | 1-to-many | ST10G025590 ST09G011020 | 2 | ||
Anchor point | many-to-1 | ST10G025590 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST10G025590 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP4G18760 TP5G09400 TP6G39030 ... | 4 | |
Tree-based ortholog | 1-to-1 | TP5G09400 | 1 | ||
Anchor point | many-to-many | TP5G09400 TP4G18760 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G09400 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-many | TC0005G07840 TC0007G00650 | 2 | |
Tree-based ortholog | 1-to-1 | TC0005G07840 | 1 | ||
Anchor point | many-to-1 | TC0005G07840 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G07840 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-many | VV08G11550 VV19G06740 | 2 | |
Tree-based ortholog | 1-to-1 | VV08G11550 | 1 | ||
Anchor point | many-to-1 | VV08G11550 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV19G06740 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM03G23720 ZM08G29620 | 2 | |
Tree-based ortholog | 1-to-1 | ZM09G14120 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM03G23720 ZM08G29620 | 2 |