Integrative Orthology Viewer: AT3G52880 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT3G09940 AT3G52880 AT5G03630 | 3 | |
Tree-based ortholog | AT3G52880 | 1 | ||
Anchor point | AT5G03630 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G52880 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00069G01920 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00069G01920 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL3G10190 | 1 | |
Tree-based ortholog | 1-to-1 | AL5G22790 | 1 | ||
Anchor point | 1-to-1 | AL5G22790 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G22790 | 1 | ||
Beta vulgaris | Tree-based ortholog | 1-to-1 | BV7G12470 | 1 | |
Anchor point | 1-to-1 | BV7G12470 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV7G12470 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-1 | BR03G01190 | 1 | |
Tree-based ortholog | 1-to-1 | BR09G34220 | 1 | ||
Anchor point | 1-to-1 | BR09G34220 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G34220 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_003G08680 CRU_006G02500 | 2 | |
Tree-based ortholog | 1-to-1 | CRU_005G18200 | 1 | ||
Anchor point | 1-to-1 | CRU_005G18200 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G18200 | 1 | ||
Carica papaya | Tree-based ortholog | 1-to-1 | CP00005G00530 | 1 | |
Anchor point | 1-to-1 | CP00005G00530 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00005G00530 | 1 | ||
Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR17G03560 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR17G03560 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-1 | CL07G06760 | 1 | |
Tree-based ortholog | 1-to-many | CL04G09760 CL10G17240 | 2 | ||
Anchor point | 1-to-many | CL10G17240 CL04G09760 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL10G17240 | 1 | ||
Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00056G00570 | 1 | |
Anchor point | 1-to-1 | CS00056G00570 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00056G00570 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-1 | CM00028G01450 | 1 | |
Tree-based ortholog | 1-to-many | CM00068G00730 CM00011G03830 | 2 | ||
Anchor point | 1-to-many | CM00011G03830 CM00068G00730 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00011G03830 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0008G01220 | 1 | |
Tree-based ortholog | 1-to-1 | EG0008G01220 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G01220 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-1 | FV3G27940 | 1 | |
Tree-based ortholog | 1-to-1 | FV6G18740 | 1 | ||
Anchor point | 1-to-1 | FV6G18740 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G18740 | 1 | ||
Glycine max | Tree-based ortholog | 1-to-many | GM10G07820 GM00G02480 | 2 | |
Anchor point | 1-to-1 | GM10G07820 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM10G07820 GM00G02480 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-1 | GR13G16650 | 1 | |
Tree-based ortholog | 1-to-many | GR06G15680 GR02G24130 | 2 | ||
Anchor point | 1-to-many | GR06G15680 GR02G24130 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR06G15680 | 1 | ||
Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ4G046310 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G046310 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD03G019120 MD04G016730 | 2 | |
Tree-based ortholog | 1-to-many | MD14G001280 MD00G412920 | 2 | ||
Anchor point | 1-to-1 | MD14G001280 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G412920 | 1 | ||
Manihot esculenta | Tree-based ortholog | 1-to-many | ME12513G00070 ME06550G00590 | 2 | |
Anchor point | 1-to-1 | ME06550G00590 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06550G00590 | 1 | ||
Medicago truncatula | Tree-based ortholog | 1-to-1 | MT1G060620 | 1 | |
Anchor point | 1-to-1 | MT1G060620 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G060620 | 1 | ||
Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS09G39380 OS08G44340 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS09G39380 | 1 | ||
Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL05G00890 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL05G00890 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00090G00160 PP00211G00380 PP00237G00260 | 3 | |
Tree-based ortholog | 1-to-many | PP00211G00380 PP00090G00160 PP00237G00260 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00237G00260 PP00090G00160 PP00211G00380 | 3 | ||
Populus trichocarpa | Orthologous gene family | many-to-1 | PT06G11480 | 1 | |
Tree-based ortholog | 1-to-1 | PT06G11480 | 1 | ||
Anchor point | 1-to-1 | PT06G11480 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT06G11480 | 1 | ||
Prunus persica | Orthologous gene family | many-to-1 | PPE_004G18130 | 1 | |
Tree-based ortholog | 1-to-1 | PPE_007G13710 | 1 | ||
Anchor point | 1-to-1 | PPE_007G13710 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G13710 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-1 | RC27461G00040 | 1 | |
Tree-based ortholog | 1-to-1 | RC29917G00560 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29917G00560 | 1 | ||
Solanum lycopersicum | Tree-based ortholog | 1-to-1 | SL09G009390 | 1 | |
Anchor point | 1-to-1 | SL09G009390 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL09G009390 | 1 | ||
Solanum tuberosum | Tree-based ortholog | 1-to-1 | ST09G010820 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST09G010820 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-1 | TP6G39120 | 1 | |
Tree-based ortholog | 1-to-1 | TP5G09460 | 1 | ||
Anchor point | 1-to-1 | TP5G09460 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G09460 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-1 | TC0007G06720 | 1 | |
Tree-based ortholog | 1-to-1 | TC0005G08130 | 1 | ||
Anchor point | 1-to-1 | TC0005G08130 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G08130 | 1 | ||
Vitis vinifera | Tree-based ortholog | 1-to-1 | VV08G11740 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV08G11740 | 1 | ||
Zea mays | Orthologous gene family | many-to-1 | ZM02G27590 | 1 | |
Tree-based ortholog | 1-to-many | ZM02G27590 ZM04G10660 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G10660 | 1 |