Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT3G52740
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT3G52740 | 1 |  |
| Tree-based ortholog | AT3G52740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT3G52740 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00139G00170 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00139G00170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00139G00170 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL5G22640 | 1 | |
| Tree-based ortholog | 1-to-1 | AL5G22640 | 1 | ||
| Anchor point | N/A | AL5G22640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G22640 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV7G12120 | 1 | |
| Tree-based ortholog | 1-to-1 | BV7G12120 | 1 | ||
| Anchor point | N/A | BV7G12120 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV7G12120 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-many | BR06G09650 BR09G34110 | 2 | |
| Tree-based ortholog | 1-to-many | BR06G09650 BR09G34110 | 2 | ||
| Anchor point | N/A | BR09G34110 BR06G09650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G34110 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_005G18040 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_005G18040 | 1 | ||
| Anchor point | N/A | CRU_005G18040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G18040 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00005G00230 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00005G00230 | 1 | ||
| Anchor point | N/A | CP00005G00230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00005G00230 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL10G17070 | 1 | |
| Anchor point | N/A | CL10G17070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL10G17070 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00018G00030 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00082G00250 | 1 | ||
| Anchor point | N/A | CS00018G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00018G00030 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00011G04000 | 1 | |
| Anchor point | N/A | CM00068G00920 CM00011G04000 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00011G04000 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0011G16820 | 1 | |
| Tree-based ortholog | 1-to-many | EG0005G21490 EG0011G16820 EG0002G32350 | 3 | ||
| Anchor point | N/A | EG0011G16820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0011G16820 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV6G18260 | 1 | |
| Tree-based ortholog | 1-to-many | FV2G43960 FV6G18260 | 2 | ||
| Anchor point | N/A | FV6G18260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G18260 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM10G08420 GM13G22080 | 2 | |
| Tree-based ortholog | 1-to-many | GM12G31031 GM13G39280 GM10G08420 ... | 6 | ||
| Anchor point | N/A | GM13G22080 GM19G37951 GM03G35300 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM13G22080 GM10G08420 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR09G40300 | 1 | |
| Tree-based ortholog | 1-to-many | GR09G40300 GR02G24020 GR09G08590 | 3 | ||
| Anchor point | N/A | GR02G24020 GR09G40300 GR09G08590 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G40300 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ1G066410 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ1G066410 | 1 | ||
| Anchor point | N/A | LJ1G066410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G066410 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD01G004370 MD04G007030 | 2 | |
| Tree-based ortholog | 1-to-many | MD00G104320 MD10G024970 MD01G004370 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD01G004370 MD04G007030 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-many | ME01664G00070 ME06550G00740 | 2 | |
| Tree-based ortholog | 1-to-many | ME05859G00720 ME01664G00070 ME06550G00740 | 3 | ||
| Anchor point | N/A | ME06550G00740 ME05859G00720 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME06550G00740 ME01664G00070 | 2 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-many | MT2G086480 MT7G104540 MT1G059990 | 3 | |
| Anchor point | N/A | MT7G104540 MT1G059990 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G104540 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS04G33610 | 1 | |
| Tree-based ortholog | 1-to-many | OS02G32990 OS04G33610 | 2 | ||
| Anchor point | N/A | OS04G33610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS04G33610 | 1 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT09G16400 PT04G20300 PT09G16390 ... | 4 | |
| Anchor point | N/A | PT09G16390 PT04G20290 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT04G20300 PT09G16390 PT04G20290 | 3 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_007G13310 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_007G13310 | 1 | ||
| Anchor point | N/A | PPE_007G13310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G13310 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29625G00310 | 1 | |
| Tree-based ortholog | 1-to-many | RC30055G00250 RC30055G00240 RC30055G00260 ... | 4 | ||
| Anchor point | N/A | RC29625G00310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29625G00310 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL11G068380 SL11G068390 SL09G009420 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL09G009420 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST11G025810 ST09G010760 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST09G010760 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP5G09590 | 1 | |
| Tree-based ortholog | 1-to-1 | TP5G09590 | 1 | ||
| Anchor point | N/A | TP5G09590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G09590 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0005G08550 | 1 | |
| Tree-based ortholog | 1-to-many | TC0009G27900 TC0005G08550 | 2 | ||
| Anchor point | N/A | TC0005G08550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G08550 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM05G29790 ZM02G16090 ZM10G16120 | 3 | |
| Anchor point | N/A | ZM05G29790 ZM02G16090 ZM10G16120 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM02G16090 ZM10G16120 | 2 |