Integrative Orthology Viewer: AT3G48670 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT3G12550 AT3G48670 AT4G01780 | 3 | |
Tree-based ortholog | AT3G48670 AT4G01780 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G48670 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00012G01750 ATR_00012G01830 | 2 | |
Tree-based ortholog | many-to-many | ATR_00012G01770 ATR_02578G00010 ATR_00010G01300 ... | 6 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ATR_00012G01830 ATR_00012G01750 | 2 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL3G12970 AL5G17540 | 2 | |
Tree-based ortholog | many-to-1 | AL5G17540 | 1 | ||
Anchor point | N/A | AL5G17540 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G17540 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV5G11370 BV5G11390 | 2 | |
Tree-based ortholog | many-to-1 | BV2G05350 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV2G05350 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR05G30290 BR06G16860 BR06G19730 | 3 | |
Tree-based ortholog | many-to-many | BR06G16860 BR06G19730 | 2 | ||
Anchor point | N/A | BR06G19730 BR06G16860 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G16860 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_001G15010 CRU_002G25300 CRU_003G11370 ... | 4 | |
Tree-based ortholog | many-to-1 | CRU_005G13900 | 1 | ||
Anchor point | N/A | CRU_005G13900 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G13900 | 1 | ||
Carica papaya | Orthologous gene family | many-to-1 | CP00010G00760 | 1 | |
Tree-based ortholog | many-to-1 | CP00001G04080 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00001G04080 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-many | CL07G03450 CL09G09150 | 2 | |
Tree-based ortholog | many-to-1 | CL07G03450 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL07G03450 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00014G00360 CS00546G00120 CS00744G00050 | 3 | |
Tree-based ortholog | many-to-many | CS00021G01860 CS00744G00040 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00021G01860 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00032G01020 CM00061G00400 CM00063G00690 | 3 | |
Tree-based ortholog | many-to-1 | CM00063G00690 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00063G00690 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0007G23280 | 1 | |
Tree-based ortholog | many-to-1 | EG0007G23280 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0007G23280 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-1 | FV7G26100 | 1 | |
Tree-based ortholog | many-to-1 | FV7G26100 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV7G26100 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM02G06000 GM02G41581 GM07G02740 ... | 9 | |
Tree-based ortholog | many-to-many | GM02G41581 GM14G07370 GM11G34010 ... | 8 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM08G36280 GM11G34010 GM16G24680 ... | 4 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR09G12440 GR10G20130 GR13G26340 | 3 | |
Tree-based ortholog | many-to-many | GR10G20140 GR10G20130 GR12G07100 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR12G07100 | 1 | ||
Lotus japonicus | Orthologous gene family | many-to-1 | LJ6G015770 | 1 | |
Tree-based ortholog | many-to-1 | LJ6G022620 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G022620 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G202910 MD00G389990 MD01G012410 ... | 5 | |
Tree-based ortholog | many-to-many | MD00G202910 MD00G389990 MD01G012410 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD01G012410 MD00G202910 MD00G389990 | 3 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME06916G00630 ME09492G00040 | 2 | |
Tree-based ortholog | many-to-1 | ME08265G02160 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME08265G02160 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT3G067815 MT5G079940 | 2 | |
Tree-based ortholog | many-to-many | MT5G079940 MT3G067855 MT3G067845 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G067815 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G03570 OS01G44230 OS02G19130 ... | 4 | |
Tree-based ortholog | many-to-many | OS05G06130 OS07G02240 OS01G03570 ... | 9 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G44230 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00063G00810 PP00228G00220 PP00228G00230 ... | 4 | |
Tree-based ortholog | many-to-many | PP00063G00810 PP00228G00220 PP00228G00230 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00228G00230 PP00063G00810 PP00374G00020 | 3 | ||
Populus trichocarpa | Tree-based ortholog | many-to-1 | PT10G20270 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT10G20270 | 1 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_003G08390 PPE_006G07490 | 2 | |
Tree-based ortholog | many-to-1 | PPE_002G22800 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G22800 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-1 | RC29588G00140 | 1 | |
Tree-based ortholog | many-to-1 | RC27383G00080 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC27383G00080 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL05G054420 SL06G005550 SL06G051810 | 3 | |
Tree-based ortholog | many-to-many | SL06G051810 SL05G054420 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G051810 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST05G027400 ST06G011440 | 2 | |
Tree-based ortholog | many-to-many | ST06G011440 ST05G027400 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST06G011440 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP3G10690 TP5G13340 | 2 | |
Tree-based ortholog | many-to-1 | TP5G13340 | 1 | ||
Anchor point | N/A | TP5G13340 TP7G00920 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G13340 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-1 | TC0006G03870 | 1 | |
Tree-based ortholog | many-to-1 | TC0010G03800 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0010G03800 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-1 | VV11G00720 | 1 | |
Tree-based ortholog | many-to-1 | VV13G05180 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV13G05180 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM03G06340 ZM03G36850 | 2 | |
Tree-based ortholog | many-to-many | ZM01G45850 ZM03G36850 ZM03G06340 ... | 6 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G36850 | 1 |