Integrative Orthology Viewer: AT3G45060 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT1G08090 AT1G08100 AT1G12940 ... | 7 | |
Tree-based ortholog | AT3G45060 | 1 | ||
Anchor point | AT1G08090 AT5G60770 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G45060 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00085G00580 ATR_00140G00550 | 2 | |
Tree-based ortholog | 1-to-1 | ATR_00140G00550 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00140G00550 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G07700 AL1G07710 AL5G13050 ... | 7 | |
Tree-based ortholog | 1-to-1 | AL5G13050 | 1 | ||
Anchor point | many-to-many | AL5G13050 AL8G26910 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G13050 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV0G28910 BV0G28920 BV0G28930 ... | 9 | |
Tree-based ortholog | 1-to-many | BV7G18470 BV7G18480 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BV7G03020 BV7G03030 | 2 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR01G22230 BR01G22240 BR02G11430 ... | 13 | |
Tree-based ortholog | 1-to-many | BR01G22230 BR01G38220 | 2 | ||
Anchor point | many-to-many | BR01G22230 BR02G11430 BR10G13300 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR01G22230 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_001G07030 CRU_001G07040 CRU_001G12100 ... | 8 | |
Tree-based ortholog | 1-to-1 | CRU_005G10180 | 1 | ||
Anchor point | many-to-many | CRU_005G10180 CRU_008G20830 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G10180 | 1 | ||
Carica papaya | Orthologous gene family | many-to-many | CP00056G00130 CP00065G00290 CP00065G00300 ... | 5 | |
Tree-based ortholog | 1-to-1 | CP00065G00300 | 1 | ||
Anchor point | many-to-1 | CP00065G00290 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00065G00290 | 1 | ||
Chlamydomonas reinhardtii | Orthologous gene family | many-to-many | CR09G02740 CR09G10470 CR09G10480 | 3 | |
Tree-based ortholog | 1-to-1 | CR03G02010 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR09G10480 CR09G10470 CR09G02740 | 3 | ||
Citrullus lanatus | Orthologous gene family | many-to-many | CL00G00080 CL03G02660 CL03G02670 ... | 4 | |
Tree-based ortholog | 1-to-many | CL03G02660 CL03G02670 CL00G00080 | 3 | ||
Anchor point | many-to-1 | CL03G02660 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CL03G02670 CL03G02660 | 2 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00061G00180 CS00116G00330 CS00581G00010 | 3 | |
Tree-based ortholog | 1-to-1 | CS00061G00180 | 1 | ||
Anchor point | many-to-1 | CS00061G00170 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00061G00180 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00016G02930 CM31563G00010 | 2 | |
Tree-based ortholog | 1-to-1 | CM31563G00010 | 1 | ||
Anchor point | many-to-1 | CM00004G03180 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM31563G00010 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0002G27300 EG0008G20390 EG0010G07910 | 3 | |
Tree-based ortholog | 1-to-1 | EG0010G07910 | 1 | ||
Anchor point | many-to-1 | EG0010G07910 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0010G07910 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-many | FV0G00040 FV0G15340 FV0G26200 ... | 5 | |
Tree-based ortholog | 1-to-many | FV0G26200 FV0G15340 FV3G15440 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | FV0G15340 FV0G26200 | 2 | ||
Glycine max | Orthologous gene family | many-to-many | GM08G39140 GM11G20090 GM12G08380 ... | 6 | |
Tree-based ortholog | 1-to-many | GM12G08380 GM11G20090 GM12G30050 ... | 4 | ||
Anchor point | many-to-many | GM12G08380 GM11G20090 GM13G39850 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM11G20090 GM13G39850 GM12G30050 | 3 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR01G26410 GR03G14410 GR03G14420 ... | 6 | |
Tree-based ortholog | 1-to-1 | GR03G14420 | 1 | ||
Anchor point | many-to-many | GR06G16500 GR09G11030 GR04G23070 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR03G14420 | 1 | ||
Lotus japonicus | Orthologous gene family | many-to-many | LJ1G048320 LJ3G043710 LJ3G043720 ... | 4 | |
Tree-based ortholog | 1-to-many | LJ3G043710 LJ3G043720 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | LJ3G043710 LJ3G043720 | 2 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G084600 MD00G208600 MD00G290780 ... | 5 | |
Tree-based ortholog | 1-to-many | MD00G208600 MD00G084600 MD00G400940 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G084600 MD00G208600 | 2 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME03055G00250 ME04182G00270 ME04182G00290 ... | 6 | |
Tree-based ortholog | 1-to-1 | ME04182G00300 | 1 | ||
Anchor point | many-to-1 | ME04182G00270 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME04182G00270 ME04182G00290 | 2 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT4G057865 MT4G057890 MT8G069775 | 3 | |
Tree-based ortholog | 1-to-many | MT4G057865 MT4G057890 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MT4G057865 MT4G057890 | 2 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G50820 OS02G02170 OS02G02190 | 3 | |
Tree-based ortholog | 1-to-many | OS02G02170 OS02G02190 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS02G02170 OS02G02190 | 2 | ||
Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL10G00990 | 1 | |
Tree-based ortholog | 1-to-1 | OL10G00990 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL10G00990 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00012G00260 PP00012G01880 PP00075G00380 ... | 8 | |
Tree-based ortholog | 1-to-many | PP00012G01880 PP00254G00200 PP00012G00260 ... | 8 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00012G00260 PP00449G00080 PP00012G01880 ... | 7 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT01G34830 PT09G00850 PT09G00860 ... | 4 | |
Tree-based ortholog | 1-to-many | PT09G00860 PT09G00850 | 2 | ||
Anchor point | many-to-1 | PT04G21380 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT09G00850 PT09G00860 | 2 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_003G26640 PPE_006G10490 PPE_006G10520 | 3 | |
Tree-based ortholog | 1-to-many | PPE_006G10520 PPE_006G10490 | 2 | ||
Anchor point | many-to-1 | PPE_006G10490 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PPE_006G10490 PPE_006G10520 | 2 | ||
Ricinus communis | Orthologous gene family | many-to-many | RC29589G00020 RC29589G00030 RC29589G00040 ... | 5 | |
Tree-based ortholog | 1-to-1 | RC29589G00040 | 1 | ||
Anchor point | many-to-1 | RC29589G00020 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29589G00040 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL02G067790 SL06G010250 SL06G074990 ... | 4 | |
Tree-based ortholog | 1-to-many | SL11G069750 SL06G010250 | 2 | ||
Anchor point | many-to-1 | SL06G074990 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G069750 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST02G013830 ST06G011930 ST06G030670 ... | 8 | |
Tree-based ortholog | 1-to-many | ST11G026800 ST06G011930 ST06G011900 ... | 4 | ||
Anchor point | many-to-1 | ST06G030670 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST10G024970 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP0G03940 TP1G11510 TP5G16190 ... | 7 | |
Tree-based ortholog | 1-to-1 | TP5G16200 | 1 | ||
Anchor point | many-to-many | TP6G22350 TP5G16190 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G16200 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-many | TC0002G25610 TC0002G25620 TC0005G06380 ... | 6 | |
Tree-based ortholog | 1-to-1 | TC0009G34080 | 1 | ||
Anchor point | many-to-1 | TC0009G34060 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G34080 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-many | VV06G09200 VV08G03170 | 2 | |
Tree-based ortholog | 1-to-1 | VV06G09200 | 1 | ||
Anchor point | many-to-1 | VV06G09220 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV06G09200 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM04G41480 ZM04G41500 ZM05G17230 ... | 4 | |
Tree-based ortholog | 1-to-many | ZM04G41500 ZM04G41480 ZM05G17230 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM04G41500 ZM04G41480 | 2 |