Integrative Orthology Viewer: AT3G29400 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT3G29400 AT5G61010 | 2 | |
Tree-based ortholog | AT3G29400 | 1 | ||
Anchor point | AT5G61010 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G29400 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00154G00130 | 1 | |
Tree-based ortholog | 1-to-1 | ATR_00154G00130 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00154G00130 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL5G09260 AL8G27200 | 2 | |
Tree-based ortholog | 1-to-1 | AL5G09260 | 1 | ||
Anchor point | 1-to-1 | AL5G09260 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G09260 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-1 | BV2G01660 | 1 | |
Tree-based ortholog | 1-to-1 | BV2G01660 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV2G01660 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR02G31560 BR03G40670 BR06G31650 | 3 | |
Tree-based ortholog | 1-to-many | BR06G31650 BR02G31560 | 2 | ||
Anchor point | 1-to-many | BR06G31650 BR02G31560 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G31560 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_005G07560 CRU_008G21100 | 2 | |
Tree-based ortholog | 1-to-1 | CRU_005G07560 | 1 | ||
Anchor point | 1-to-1 | CRU_005G07560 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G07560 | 1 | ||
Carica papaya | Tree-based ortholog | 1-to-1 | CP00013G01150 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00013G01150 | 1 | ||
Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR10G00900 | 1 | |
Citrullus lanatus | Orthologous gene family | many-to-many | CL04G11580 CL07G17010 | 2 | |
Tree-based ortholog | 1-to-1 | CL07G17010 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL07G17010 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00015G02550 CS00030G01070 | 2 | |
Tree-based ortholog | 1-to-1 | CS00015G02550 | 1 | ||
Anchor point | 1-to-many | CS00015G02550 CS00003G05240 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00015G02550 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00001G01200 CM00071G00800 | 2 | |
Tree-based ortholog | 1-to-1 | CM00071G00800 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00071G00800 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0002G05160 EG0009G17040 | 2 | |
Tree-based ortholog | 1-to-1 | EG0009G17040 | 1 | ||
Anchor point | 1-to-1 | EG0002G05160 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G17040 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-many | FV5G12020 FV6G42590 | 2 | |
Tree-based ortholog | 1-to-1 | FV6G42590 | 1 | ||
Anchor point | 1-to-1 | FV6G42590 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G42590 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM04G32420 GM06G22160 GM08G26920 ... | 4 | |
Tree-based ortholog | 1-to-many | GM08G26920 GM18G50160 | 2 | ||
Anchor point | 1-to-many | GM08G26920 GM04G32420 GM18G50160 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM08G26920 GM18G50160 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR06G01050 GR06G26810 GR08G19930 ... | 4 | |
Tree-based ortholog | 1-to-many | GR12G04880 GR06G01050 | 2 | ||
Anchor point | 1-to-many | GR06G01050 GR12G04880 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR12G04880 | 1 | ||
Lotus japonicus | Orthologous gene family | many-to-1 | LJ1G038380 | 1 | |
Tree-based ortholog | 1-to-1 | LJ1G038380 | 1 | ||
Anchor point | 1-to-1 | LJ1G038380 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G038380 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G161520 MD00G272570 MD00G317590 ... | 5 | |
Tree-based ortholog | 1-to-1 | MD00G317630 | 1 | ||
Anchor point | 1-to-1 | MD09G004700 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD09G004750 MD00G272570 MD00G317590 ... | 4 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME04043G02120 ME04043G02130 ME06609G00180 ... | 4 | |
Tree-based ortholog | 1-to-many | ME04043G02120 ME04043G02130 ME06609G00180 | 3 | ||
Anchor point | 1-to-many | ME06609G00180 ME04043G02120 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06609G00180 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT3G025900 MT7G013770 | 2 | |
Tree-based ortholog | 1-to-1 | MT7G013770 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G013770 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS01G55799 | 1 | |
Tree-based ortholog | 1-to-1 | OS01G55799 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G55799 | 1 | ||
Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00177G00690 PP00169G00210 PP00376G00390 ... | 6 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00070G00130 PP00177G00690 PP00142G00350 ... | 5 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT00G03560 PT00G03570 PT15G05820 ... | 6 | |
Tree-based ortholog | 1-to-many | PT00G03570 PT17G09370 PT17G09400 ... | 5 | ||
Anchor point | 1-to-1 | PT17G09370 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT00G03560 PT17G09390 PT17G09400 | 3 | ||
Prunus persica | Orthologous gene family | many-to-1 | PPE_005G20890 | 1 | |
Tree-based ortholog | 1-to-1 | PPE_003G23470 | 1 | ||
Anchor point | 1-to-many | PPE_003G23470 PPE_005G20890 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G20890 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-many | RC29905G00040 RC30138G01400 | 2 | |
Tree-based ortholog | 1-to-1 | RC29905G00040 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29905G00040 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL02G088800 SL03G115070 | 2 | |
Tree-based ortholog | 1-to-1 | SL02G088800 | 1 | ||
Anchor point | 1-to-many | SL02G088800 SL03G115070 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL02G088800 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST02G034080 ST03G028610 | 2 | |
Tree-based ortholog | 1-to-1 | ST02G034080 | 1 | ||
Anchor point | 1-to-1 | ST02G034080 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST02G034080 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP2G18000 TP2G24320 | 2 | |
Tree-based ortholog | 1-to-1 | TP2G18000 | 1 | ||
Anchor point | 1-to-1 | TP2G18000 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G18000 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-many | TC0003G10550 TC0004G10000 | 2 | |
Tree-based ortholog | 1-to-1 | TC0004G10000 | 1 | ||
Anchor point | 1-to-many | TC0004G10000 TC0003G10550 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0004G10000 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-1 | VV17G02630 | 1 | |
Tree-based ortholog | 1-to-1 | VV14G13000 | 1 | ||
Anchor point | 1-to-many | VV14G13000 VV08G12840 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV17G02630 | 1 | ||
Zea mays | Orthologous gene family | many-to-1 | ZM03G31070 | 1 | |
Tree-based ortholog | 1-to-1 | ZM03G31070 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G31070 | 1 |