Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT3G27850
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT3G27830 AT3G27850 | 2 |  |
| Tree-based ortholog | AT3G27850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT3G27850 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00036G00420 | 1 | |
| Tree-based ortholog | 1-to-many | ATR_00081G00240 ATR_00036G00420 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00036G00420 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL5G06930 AL5G07000 | 2 | |
| Tree-based ortholog | 1-to-1 | AL5G07000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G07000 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G58360 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G58360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G58360 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR06G32590 BR06G32600 BR09G02540 | 3 | |
| Tree-based ortholog | 1-to-many | BR03G18080 BR09G02540 BR06G32600 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G32600 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_005G05840 CRU_005G05860 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_005G05860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G05860 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00039G00910 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00039G00910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00039G00910 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR13G04520 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR13G04520 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL09G19520 | 1 | |
| Tree-based ortholog | 1-to-many | CL10G12260 CL09G19520 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL09G19520 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS10581G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | CS10581G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS10581G00010 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00048G00790 | 1 | |
| Tree-based ortholog | 1-to-many | CM00011G09150 CM00048G00790 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00048G00790 | 1 | ||
| Eucalyptus grandis | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G18590 | 1 | |
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G39010 | 1 | |
| Tree-based ortholog | 1-to-1 | FV0G39010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G39010 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM11G10550 GM12G02850 | 2 | |
| Tree-based ortholog | 1-to-many | GM11G10550 GM12G02850 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM11G10550 GM12G02850 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR01G26310 GR04G01410 GR12G06260 | 3 | |
| Tree-based ortholog | 1-to-many | GR12G06260 GR04G01410 GR01G26310 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR04G01410 GR12G06260 | 2 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G018720 | 1 | |
| Malus domestica | Orthologous gene family | many-to-many | MD00G022950 MD00G347550 MD09G002110 | 3 | |
| Tree-based ortholog | 1-to-many | MD09G002110 MD00G022950 MD00G347540 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD09G002110 MD00G347550 MD00G022950 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00247G00110 ME12327G00020 | 2 | |
| Tree-based ortholog | 1-to-many | ME00247G00110 ME12327G00020 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME00247G00110 ME12327G00020 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT6G006060 | 1 | |
| Tree-based ortholog | 1-to-1 | MT6G006060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT6G006060 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS01G47330 | 1 | |
| Tree-based ortholog | 1-to-many | OS01G47330 OS05G49320 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G47330 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL04G04730 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL04G04730 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00006G00710 PP00060G00740 PP00072G00760 ... | 5 | |
| Tree-based ortholog | 1-to-many | PP00242G00530 PP00215G00430 PP00072G00760 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00242G00530 PP00072G00760 PP00060G00740 ... | 5 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT01G34610 | 1 | |
| Tree-based ortholog | 1-to-1 | PT01G34610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT01G34610 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_003G26420 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_003G26420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G26420 | 1 | ||
| Ricinus communis | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29634G00110 | 1 | |
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL02G086730 | 1 | |
| Tree-based ortholog | 1-to-many | SL02G086740 SL02G086730 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL02G086730 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST02G036190 | 1 | |
| Tree-based ortholog | 1-to-many | ST02G036180 ST02G036190 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST02G036190 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP2G16890 | 1 | |
| Tree-based ortholog | 1-to-1 | TP2G16890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G16890 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0004G01140 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0004G01140 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0004G01140 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV14G11470 | 1 | |
| Tree-based ortholog | 1-to-1 | VV14G11470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV14G11470 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM03G35670 ZM08G24990 | 2 | |
| Tree-based ortholog | 1-to-many | ZM03G35670 ZM08G24990 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM03G35670 ZM08G24990 | 2 |