Integrative Orthology Viewer: AT3G12900 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT3G12900 | 1 | |
Tree-based ortholog | AT5G59540 AT1G06620 AT1G06640 ... | 8 | ||
Best-Hits-and-Inparalogs(BHI)family | AT3G12900 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00001G00530 | 1 | |
Tree-based ortholog | many-to-many | ATR_00053G01460 ATR_00021G01820 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00001G00530 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL3G13330 | 1 | |
Tree-based ortholog | many-to-many | AL8G25710 AL4G15500 AL3G13330 ... | 5 | ||
Anchor point | N/A | AL3G13330 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G13330 | 1 | ||
Beta vulgaris | Tree-based ortholog | many-to-1 | BV3G09740 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G11560 | 1 | ||
Brassica rapa | Orthologous gene family | 1-to-many | BR00G00140 BR03G33210 BR05G29970 | 3 | |
Tree-based ortholog | many-to-many | BR10G01380 BR03G10460 BR09G52550 ... | 19 | ||
Anchor point | N/A | BR00G00140 BR05G29970 BR03G33210 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR03G33210 | 1 | ||
Capsella rubella | Orthologous gene family | 1-to-1 | CRU_003G11720 | 1 | |
Tree-based ortholog | many-to-many | CRU_001G05590 CRU_003G11720 CRU_008G19660 ... | 6 | ||
Anchor point | N/A | CRU_003G11720 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G11720 | 1 | ||
Carica papaya | Orthologous gene family | 1-to-1 | CP00114G00400 | 1 | |
Tree-based ortholog | many-to-many | CP00104G00980 CP30480G00040 CP00044G00800 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00114G00400 | 1 | ||
Citrullus lanatus | Tree-based ortholog | many-to-many | CL05G04750 CL05G04760 CL05G04790 ... | 4 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL07G05720 | 1 | ||
Citrus sinensis | Orthologous gene family | 1-to-many | CS00052G00930 CS00052G00940 | 2 | |
Tree-based ortholog | many-to-many | CS00022G00110 CS00439G00130 CS00439G00120 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CS00052G00930 CS00052G00940 | 2 | ||
Cucumis melo | Tree-based ortholog | many-to-many | CM00093G00240 CM00057G00090 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00093G00240 | 1 | ||
Eucalyptus grandis | Tree-based ortholog | many-to-many | EG0001G22350 EG0008G25210 EG0008G25130 ... | 12 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0008G25190 EG0008G25170 EG0008G25270 ... | 4 | ||
Fragaria vesca | Orthologous gene family | 1-to-1 | FV3G17340 | 1 | |
Tree-based ortholog | many-to-many | FV2G08740 FV7G36490 FV3G17340 ... | 8 | ||
Anchor point | N/A | FV3G17340 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G17340 | 1 | ||
Glycine max | Orthologous gene family | 1-to-many | GM08G18000 GM08G18033 | 2 | |
Tree-based ortholog | many-to-many | GM09G26830 GM13G18240 GM16G32203 ... | 5 | ||
Anchor point | N/A | GM08G18011 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM08G18000 | 1 | ||
Gossypium raimondii | Orthologous gene family | 1-to-many | GR02G03690 GR02G03700 GR02G03710 ... | 8 | |
Tree-based ortholog | many-to-many | GR06G24920 GR04G25850 GR06G07190 ... | 6 | ||
Anchor point | N/A | GR02G03730 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR02G03740 | 1 | ||
Lotus japonicus | Orthologous gene family | 1-to-1 | LJ3G014460 | 1 | |
Tree-based ortholog | many-to-many | LJ3G007860 LJ3G007850 LJ3G007880 ... | 6 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G014460 | 1 | ||
Malus domestica | Orthologous gene family | 1-to-many | MD00G303440 MD05G011060 | 2 | |
Tree-based ortholog | many-to-many | MD06G007920 MD00G397040 MD13G022880 ... | 9 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD05G011060 | 1 | ||
Manihot esculenta | Orthologous gene family | 1-to-many | ME02477G00040 ME02477G00050 ME03115G00010 ... | 4 | |
Tree-based ortholog | many-to-many | ME10563G01020 ME01551G01140 ME08673G00100 ... | 7 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME02477G00040 | 1 | ||
Medicago truncatula | Orthologous gene family | 1-to-1 | MT2G068840 | 1 | |
Tree-based ortholog | many-to-many | MT7G029655 MT1G070185 MT8G009110 ... | 15 | ||
Anchor point | N/A | MT2G068800 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G068840 | 1 | ||
Oryza sativa ssp. japonica | Tree-based ortholog | many-to-many | OS03G48430 OS04G10350 OS08G30210 ... | 6 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G48430 | 1 | ||
Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00013G01990 PP00057G00650 PP00040G00390 | 3 | |
Populus trichocarpa | Orthologous gene family | 1-to-1 | PT05G09790 | 1 | |
Tree-based ortholog | many-to-many | PT10G07320 PT01G00690 PT05G22240 ... | 7 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT05G09790 | 1 | ||
Prunus persica | Orthologous gene family | 1-to-1 | PPE_004G13160 | 1 | |
Tree-based ortholog | many-to-many | PPE_008G24080 PPE_008G24000 PPE_008G24050 ... | 12 | ||
Anchor point | N/A | PPE_004G13160 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G13160 | 1 | ||
Ricinus communis | Orthologous gene family | 1-to-1 | RC30169G01120 | 1 | |
Tree-based ortholog | many-to-1 | RC29603G00100 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30169G01120 | 1 | ||
Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL11G045520 | 1 | |
Tree-based ortholog | many-to-many | SL06G053650 SL11G045520 SL01G016680 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G045520 | 1 | ||
Solanum tuberosum | Orthologous gene family | 1-to-1 | ST11G019830 | 1 | |
Tree-based ortholog | many-to-many | ST06G017200 ST10G017980 ST06G017170 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G019830 | 1 | ||
Thellungiella parvula | Orthologous gene family | 1-to-1 | TP3G11040 | 1 | |
Tree-based ortholog | many-to-many | TP6G36990 TP4G13310 TP3G11040 ... | 7 | ||
Anchor point | N/A | TP3G11040 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G11040 | 1 | ||
Theobroma cacao | Orthologous gene family | 1-to-many | TC0007G13940 TC0007G13950 TC0007G13970 ... | 4 | |
Tree-based ortholog | many-to-many | TC0004G25500 TC0001G25960 TC0004G25430 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TC0007G13970 TC0007G13940 TC0007G13950 ... | 4 | ||
Vitis vinifera | Orthologous gene family | 1-to-many | VV00G02860 VV00G20090 VV19G08310 | 3 | |
Tree-based ortholog | many-to-many | VV19G08310 VV00G02860 VV05G07750 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV00G20090 VV00G02860 VV19G08310 | 3 | ||
Zea mays | Tree-based ortholog | many-to-many | ZM10G13910 ZM10G05490 ZM10G07910 | 3 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM02G06470 | 1 |