Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT3G06500
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G22650 AT1G35580 AT1G72000 ... | 7 |  |
| Tree-based ortholog | AT3G06500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT3G06500 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00017G00150 ATR_00041G02700 | 2 | |
| Tree-based ortholog | 1-to-1 | ATR_00003G02070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00003G02070 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G24240 AL1G37370 AL2G20760 ... | 7 | |
| Tree-based ortholog | 1-to-1 | AL3G06710 | 1 | ||
| Anchor point | N/A | AL3G06710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G06710 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G61890 BV1G03230 BV1G04860 ... | 4 | |
| Tree-based ortholog | 1-to-many | BV4G09160 BV0G40670 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G09160 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G03350 BR01G40580 BR03G25290 ... | 10 | |
| Tree-based ortholog | 1-to-1 | BR05G34530 | 1 | ||
| Anchor point | N/A | BR05G34530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR05G34530 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G31580 CRU_002G17720 CRU_003G04980 ... | 6 | |
| Tree-based ortholog | 1-to-1 | CRU_003G05730 | 1 | ||
| Anchor point | N/A | CRU_003G05730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G05730 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00037G01930 | 1 | |
| Tree-based ortholog | 1-to-many | CP00048G01820 CP00009G00010 | 2 | ||
| Anchor point | N/A | CP00009G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00009G00010 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL02G04460 CL02G15110 CL09G09490 | 3 | |
| Tree-based ortholog | 1-to-many | CL02G15110 CL05G07530 | 2 | ||
| Anchor point | N/A | CL05G07530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G07530 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00001G04550 CS00016G01850 | 2 | |
| Tree-based ortholog | 1-to-many | CS00004G04650 CS09933G00020 CS00016G01850 | 3 | ||
| Anchor point | N/A | CS00016G01850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00016G01850 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00019G02870 CM00065G00260 | 2 | |
| Tree-based ortholog | 1-to-many | CM00003G02850 CM00006G08360 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00006G08360 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0006G13520 EG0006G21280 EG0007G12870 | 3 | |
| Tree-based ortholog | 1-to-many | EG0008G26740 EG0002G33600 | 2 | ||
| Anchor point | N/A | EG0008G26740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G33600 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV0G43440 FV2G06420 FV2G38540 ... | 4 | |
| Tree-based ortholog | 1-to-many | FV6G02970 FV3G38260 | 2 | ||
| Anchor point | N/A | FV3G38260 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G38260 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM04G00750 GM06G00770 GM10G35890 ... | 5 | |
| Tree-based ortholog | 1-to-many | GM03G38970 GM19G41500 GM10G28640 ... | 6 | ||
| Anchor point | N/A | GM07G36440 GM17G04160 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM07G36440 GM17G04160 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G12350 GR04G15120 GR05G25210 ... | 8 | |
| Tree-based ortholog | 1-to-many | GR13G13060 GR07G30810 GR04G23550 ... | 5 | ||
| Anchor point | N/A | GR13G20820 GR11G20360 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR11G20360 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-many | LJ1G042680 LJ5G030720 | 2 | |
| Tree-based ortholog | 1-to-many | LJ1G068840 LJ5G026170 LJ4G037440 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G037440 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G057620 MD00G213120 MD00G318260 ... | 8 | |
| Tree-based ortholog | 1-to-many | MD12G020970 MD04G015540 MD16G009110 | 3 | ||
| Anchor point | N/A | MD16G009110 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD16G009110 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME02960G00280 ME03581G00600 ME07012G00510 ... | 5 | |
| Tree-based ortholog | 1-to-many | ME10305G00540 ME02264G01050 ME00708G00180 | 3 | ||
| Anchor point | N/A | ME00708G00180 ME02264G01050 ME10305G00540 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME00708G00180 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT1G095970 MT1G096140 MT3G117710 | 3 | |
| Tree-based ortholog | 1-to-many | MT7G111890 MT1G084610 MT3G015100 ... | 4 | ||
| Anchor point | N/A | MT4G123030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G123030 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS02G34560 OS04G35280 OS11G07440 | 3 | |
| Tree-based ortholog | 1-to-1 | OS01G22900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G20020 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00032G00790 PP00227G00220 PP00261G00120 ... | 5 | |
| Tree-based ortholog | 1-to-many | PP00279G00200 PP00015G00250 PP00313G00110 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00313G00110 PP00279G00200 PP00015G00250 | 3 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT02G17360 PT04G16750 PT05G01080 ... | 7 | |
| Tree-based ortholog | 1-to-many | PT13G00660 PT05G01080 PT08G10150 | 3 | ||
| Anchor point | N/A | PT08G10150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT08G10150 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G37380 PPE_001G55840 PPE_002G18480 ... | 5 | |
| Tree-based ortholog | 1-to-many | PPE_006G31540 PPE_001G10650 | 2 | ||
| Anchor point | N/A | PPE_001G10650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G31540 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29728G00050 RC29836G00290 | 2 | |
| Tree-based ortholog | 1-to-many | RC30128G03240 RC29889G01130 | 2 | ||
| Anchor point | N/A | RC29889G01130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29889G01130 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G058010 SL01G111100 SL04G081440 ... | 5 | |
| Tree-based ortholog | 1-to-many | SL01G100810 SL01G058020 SL01G058010 | 3 | ||
| Anchor point | N/A | SL01G058010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G100810 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G048510 ST04G034810 ST06G024240 ... | 4 | |
| Tree-based ortholog | 1-to-many | ST01G038610 ST01G013030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G013030 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G20160 TP1G30310 TP3G04680 ... | 5 | |
| Tree-based ortholog | 1-to-1 | TP3G05450 | 1 | ||
| Anchor point | N/A | TP3G05450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G05450 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0002G06470 TC0008G04280 TC0008G18540 | 3 | |
| Tree-based ortholog | 1-to-many | TC0005G32300 TC0004G30700 | 2 | ||
| Anchor point | N/A | TC0004G30700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0004G30700 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV13G12050 VV18G10570 VV18G15230 | 3 | |
| Tree-based ortholog | 1-to-many | VV14G09850 VV05G11200 | 2 | ||
| Anchor point | N/A | VV05G11200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV05G11200 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G13740 ZM02G23520 ZM04G16310 ... | 6 | |
| Tree-based ortholog | 1-to-many | ZM03G11730 ZM08G07720 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM08G07720 ZM03G11730 | 2 |