Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT2G22430
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT2G22430 | 1 |  |
| Tree-based ortholog | AT2G22430 | 1 | ||
| Anchor point | AT4G40060 AT5G65310 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT2G22430 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00008G01350 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00008G01350 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL4G01890 | 1 | |
| Tree-based ortholog | 1-to-1 | AL4G01890 | 1 | ||
| Anchor point | many-to-many | AL7G02330 AL8G32130 AL4G01890 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL4G01890 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV6G05200 | 1 | |
| Anchor point | many-to-1 | BV6G05200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G05200 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR09G09670 | 1 | |
| Tree-based ortholog | 1-to-many | BR04G12540 BR09G09670 | 2 | ||
| Anchor point | many-to-many | BR01G00940 BR02G41050 BR03G56130 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G09670 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_004G01510 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_004G01510 | 1 | ||
| Anchor point | many-to-many | CRU_004G01510 CRU_008G25410 CRU_004G01840 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_004G01510 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00055G00670 | 1 | |
| Anchor point | many-to-1 | CP00055G00670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00055G00670 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-many | CL01G18850 CL02G09900 | 2 | |
| Anchor point | many-to-1 | CL01G18850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G18850 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00059G00640 | 1 | |
| Anchor point | many-to-1 | CS00059G00640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00059G00640 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-1 | CM00007G07650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00007G07650 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0008G38420 | 1 | |
| Anchor point | many-to-1 | EG0006G03270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G03270 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV0G22050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G22050 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM11G37920 GM18G01830 GM05G30940 ... | 4 | |
| Anchor point | many-to-many | GM18G01830 GM08G14130 GM11G37920 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM18G01830 GM11G37920 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR08G09110 GR03G04150 GR11G11150 ... | 4 | |
| Anchor point | many-to-many | GR11G11150 GR08G09110 GR07G23520 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR03G04150 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-many | LJ2G022080 LJ2G017050 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G022390 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-1 | MD15G025180 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD15G025180 | 1 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME08261G00150 ME08265G01310 | 2 | |
| Anchor point | many-to-1 | ME08265G01310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME08265G01310 ME08261G00150 | 2 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-many | MT3G086790 MT8G089895 | 2 | |
| Anchor point | many-to-1 | MT3G086790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G089895 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS02G43330 OS04G45810 OS09G35910 ... | 7 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS08G37580 OS09G29460 | 2 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00034G01770 PP00065G00220 PP00143G00400 ... | 16 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00007G01530 PP00034G01730 PP00077G00710 ... | 16 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT07G09710 PT05G07190 | 2 | |
| Anchor point | many-to-1 | PT07G09710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT05G07190 PT07G09710 | 2 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_006G20020 | 1 | |
| Anchor point | many-to-1 | PPE_006G20020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G20020 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC28307G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29908G02300 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL05G051460 SL11G010270 | 2 | |
| Anchor point | many-to-many | SL05G051460 SL11G010270 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL11G010270 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST05G023910 ST11G009430 | 2 | |
| Anchor point | many-to-many | ST11G009430 ST05G023910 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G009430 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP4G01450 | 1 | |
| Tree-based ortholog | 1-to-1 | TP4G01450 | 1 | ||
| Anchor point | many-to-many | TP2G28420 TP4G01450 TP7G35790 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G01450 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0001G09170 | 1 | |
| Anchor point | many-to-1 | TC0001G09170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G09170 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV07G02740 | 1 | |
| Anchor point | many-to-many | VV07G02740 VV18G03960 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G02740 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM05G35150 ZM02G08210 ZM02G33960 ... | 9 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM02G32170 ZM07G16880 | 2 |