Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT1G71170
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G71170 AT1G71180 | 2 |  |
| Tree-based ortholog | AT1G71170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT1G71170 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00056G01030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00056G01030 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL2G19910 | 1 | |
| Tree-based ortholog | 1-to-1 | AL2G19910 | 1 | ||
| Anchor point | N/A | AL2G19910 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G19910 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV4G15870 | 1 | |
| Tree-based ortholog | 1-to-1 | BV4G15870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G15870 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR02G20890 | 1 | |
| Tree-based ortholog | 1-to-1 | BR02G20890 | 1 | ||
| Anchor point | N/A | BR02G20890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G20890 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_002G17020 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_002G17020 | 1 | ||
| Anchor point | N/A | CRU_002G17020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G17020 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-many | CP00032G00460 CP00113G00520 | 2 | |
| Tree-based ortholog | 1-to-1 | CP00113G00520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00113G00520 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR06G07090 | 1 | |
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL05G10960 | 1 | |
| Tree-based ortholog | 1-to-1 | CL05G10960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G10960 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00141G00050 | 1 | |
| Tree-based ortholog | 1-to-many | CS00141G00050 CS02673G00030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00141G00050 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00038G01110 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00038G01110 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00038G01110 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0009G23020 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0009G23020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0009G23020 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G33530 | 1 | |
| Tree-based ortholog | 1-to-1 | FV0G33530 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G33530 | 1 | ||
| Glycine max | Orthologous gene family | many-to-1 | GM05G30310 | 1 | |
| Tree-based ortholog | 1-to-1 | GM05G30310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM05G30310 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR13G03790 | 1 | |
| Tree-based ortholog | 1-to-1 | GR13G03790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G03790 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ4G048470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G048470 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G004850 MD00G004870 | 2 | |
| Tree-based ortholog | 1-to-1 | MD00G268190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G004870 MD00G004850 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME05979G00520 | 1 | |
| Tree-based ortholog | 1-to-1 | ME05979G00520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME05979G00520 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT8G088900 | 1 | |
| Tree-based ortholog | 1-to-1 | MT8G088900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G088900 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS05G49070 | 1 | |
| Tree-based ortholog | 1-to-1 | OS05G49070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS05G49070 | 1 | ||
| Ostreococcus lucimarinus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL05G00200 | 1 | |
| Physcomitrella patens | Tree-based ortholog | 1-to-1 | PP00060G00170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00060G00170 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT01G21150 | 1 | |
| Tree-based ortholog | 1-to-1 | PT01G21150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT01G21150 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G54530 PPE_001G54540 | 2 | |
| Tree-based ortholog | 1-to-many | PPE_001G54530 PPE_001G54540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G54530 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30071G00200 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30071G00200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30071G00200 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL01G081510 | 1 | |
| Tree-based ortholog | 1-to-1 | SL01G081510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G081510 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST01G027590 | 1 | |
| Tree-based ortholog | 1-to-1 | ST01G027590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G027590 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP5G26340 | 1 | |
| Tree-based ortholog | 1-to-1 | TP5G26340 | 1 | ||
| Anchor point | N/A | TP5G26340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G26340 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0002G08340 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0002G08330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0002G08330 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV12G04850 | 1 | |
| Tree-based ortholog | 1-to-1 | VV12G04850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV12G04850 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM08G10660 | 1 | |
| Tree-based ortholog | 1-to-1 | ZM08G10660 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G32250 | 1 |