Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT1G58290
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G09940 AT1G58290 AT2G31250 | 3 |  |
| Tree-based ortholog | AT1G58290 | 1 | ||
| Anchor point | AT1G09940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT1G58290 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00004G01940 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00109G01410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00004G01940 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G09720 AL2G07820 AL4G16130 | 3 | |
| Tree-based ortholog | 1-to-1 | AL2G07820 | 1 | ||
| Anchor point | 1-to-many | AL1G09720 AL2G07820 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL2G07820 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV0G61740 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G61740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G61740 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR01G22940 BR01G24650 BR06G08260 ... | 5 | |
| Tree-based ortholog | 1-to-many | BR01G24650 BR09G15420 | 2 | ||
| Anchor point | 1-to-many | BR01G24650 BR09G15420 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BR01G24650 BR09G15420 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G08920 CRU_002G05950 CRU_004G10900 | 3 | |
| Tree-based ortholog | 1-to-1 | CRU_002G05950 | 1 | ||
| Anchor point | 1-to-many | CRU_002G05950 CRU_001G08920 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G05950 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP33192G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | CP33192G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP33192G00010 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR07G06980 | 1 | |
| Tree-based ortholog | 1-to-1 | CR07G06980 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR07G06980 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-many | CL08G11680 CL09G15040 | 2 | |
| Tree-based ortholog | 1-to-1 | CL08G11680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL08G11680 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS07044G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | CS07044G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS07044G00010 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00014G04770 CM00034G01830 | 2 | |
| Tree-based ortholog | 1-to-1 | CM00014G04770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00014G04770 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0006G04020 EG0006G17700 | 2 | |
| Tree-based ortholog | 1-to-1 | EG0006G04020 | 1 | ||
| Anchor point | 1-to-many | EG0006G17700 EG0006G04020 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G04020 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV2G17890 FV5G23990 | 2 | |
| Tree-based ortholog | 1-to-1 | FV5G23990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G23990 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM02G38280 GM04G09520 GM06G09630 ... | 6 | |
| Tree-based ortholog | 1-to-many | GM06G09630 GM04G09520 GM02G38280 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM02G38280 GM14G36420 GM04G09520 | 3 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR02G13780 GR09G22590 | 2 | |
| Tree-based ortholog | 1-to-many | GR02G13780 GR09G22590 | 2 | ||
| Anchor point | 1-to-many | GR09G22590 GR02G13780 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G22590 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ4G006840 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ4G006840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G006840 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD08G019570 MD10G006990 MD15G031000 | 3 | |
| Tree-based ortholog | 1-to-many | MD15G031000 MD08G019570 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD15G031000 MD08G019570 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME04260G00070 ME07444G00150 | 2 | |
| Tree-based ortholog | 1-to-1 | ME04260G00070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME04260G00070 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT3G111190 MT4G092820 MT5G067410 | 3 | |
| Tree-based ortholog | 1-to-many | MT3G111190 MT5G067410 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G111190 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS10G35840 | 1 | |
| Tree-based ortholog | 1-to-1 | OS10G35840 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS10G35840 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL11G00670 | 1 | |
| Tree-based ortholog | 1-to-1 | OL11G00670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL11G00670 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00013G00120 PP00256G00170 PP00381G00250 | 3 | |
| Tree-based ortholog | 1-to-many | PP00013G00120 PP00381G00250 PP00256G00170 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00256G00170 PP00013G00120 PP00381G00250 | 3 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G28640 PT02G10780 PT09G08060 | 3 | |
| Tree-based ortholog | 1-to-1 | PT02G10780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT02G10780 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G57480 PPE_008G09360 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_001G57480 | 1 | ||
| Anchor point | 1-to-1 | PPE_001G57480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G57480 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29804G00390 RC30170G00030 | 2 | |
| Tree-based ortholog | 1-to-1 | RC30170G00030 | 1 | ||
| Anchor point | 1-to-1 | RC30170G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30170G00030 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G106390 SL04G076870 | 2 | |
| Tree-based ortholog | 1-to-1 | SL04G076870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G076870 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G029080 ST01G043580 ST04G028730 | 3 | |
| Tree-based ortholog | 1-to-1 | ST04G028730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G028730 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G08600 TP2G05310 | 2 | |
| Tree-based ortholog | 1-to-1 | TP2G05310 | 1 | ||
| Anchor point | 1-to-many | TP1G08600 TP2G05310 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G05310 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0008G07480 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0008G07480 | 1 | ||
| Anchor point | 1-to-1 | TC0008G07480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G07480 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV03G11040 VV18G05100 | 2 | |
| Tree-based ortholog | 1-to-1 | VV18G05100 | 1 | ||
| Anchor point | 1-to-1 | VV18G05100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G05100 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G40800 ZM05G09310 ZM10G24810 | 3 | |
| Tree-based ortholog | 1-to-many | ZM05G09310 ZM01G40800 ZM10G24810 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM10G24810 ZM01G40800 ZM05G09310 | 3 |