Integrative Orthology Viewer: AT1G54490 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT1G54490 AT1G75660 AT5G42540 | 3 | |
Tree-based ortholog | AT5G42540 AT1G54490 AT1G75660 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | AT1G54490 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00004G00290 ATR_00491G00010 | 2 | |
Tree-based ortholog | many-to-many | ATR_03991G00010 ATR_00491G00010 ATR_00004G00290 ... | 7 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00004G00290 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL8G08670 | 1 | |
Tree-based ortholog | many-to-1 | AL8G08670 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL8G08670 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV1G13100 BV4G05080 BV7G03790 | 3 | |
Tree-based ortholog | many-to-many | BV0G67370 BV1G13100 BV4G05080 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G05080 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR02G23310 BR06G39090 BR07G30900 ... | 4 | |
Tree-based ortholog | many-to-many | BR06G39090 BR02G23310 BR07G30900 ... | 4 | ||
Anchor point | N/A | BR09G16360 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G16360 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_002G08840 CRU_002G21220 CRU_008G06380 | 3 | |
Tree-based ortholog | many-to-many | CRU_002G21220 CRU_002G08840 CRU_008G06380 | 3 | ||
Anchor point | N/A | CRU_002G08840 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G08840 | 1 | ||
Carica papaya | Orthologous gene family | many-to-many | CP00117G00640 CP00183G00020 | 2 | |
Tree-based ortholog | many-to-many | CP32689G00010 CP00183G00020 CP01059G00010 ... | 9 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00117G00640 | 1 | ||
Chlamydomonas reinhardtii | Orthologous gene family | many-to-many | CR06G09010 CR16G09370 | 2 | |
Tree-based ortholog | many-to-many | CR16G09370 CR03G02430 CR08G04620 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR16G09370 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-many | CL02G16650 CL09G22190 | 2 | |
Tree-based ortholog | many-to-many | CL02G16650 CL09G22190 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G16650 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00002G05360 CS00144G00060 | 2 | |
Tree-based ortholog | many-to-many | CS00144G00060 CS00002G05360 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00144G00060 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00003G04800 CM00003G04810 CM01595G00890 | 3 | |
Tree-based ortholog | many-to-many | CM00003G04810 CM01595G00890 CM00003G04800 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00003G04800 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0006G13300 EG0008G35530 | 2 | |
Tree-based ortholog | many-to-many | EG0008G35530 EG0006G13300 | 2 | ||
Anchor point | N/A | EG0008G35530 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G35530 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-many | FV0G24670 FV2G38800 FV5G30390 ... | 4 | |
Tree-based ortholog | many-to-many | FV0G40920 FV2G38800 FV7G23090 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G24670 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM03G40500 GM10G30150 GM11G18390 ... | 8 | |
Tree-based ortholog | many-to-many | GM19G08980 GM20G12180 GM12G09871 ... | 12 | ||
Anchor point | N/A | GM19G43160 GM10G30150 GM03G40500 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM19G43160 GM03G40500 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR07G28590 GR09G19560 GR09G27030 ... | 5 | |
Tree-based ortholog | many-to-many | GR08G08160 GR07G16980 GR13G25700 ... | 12 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR07G28590 | 1 | ||
Lotus japonicus | Orthologous gene family | many-to-many | LJ1G072990 LJ5G024550 | 2 | |
Tree-based ortholog | many-to-many | LJ1G072990 LJ5G024550 | 2 | ||
Anchor point | N/A | LJ1G072990 LJ5G024550 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G072990 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G306770 MD00G371520 MD04G017840 ... | 6 | |
Tree-based ortholog | many-to-many | MD00G414610 MD00G371520 MD12G014850 ... | 9 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD04G017840 MD12G023600 | 2 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME03802G01020 ME07575G00110 | 2 | |
Tree-based ortholog | many-to-many | ME03614G00160 ME03802G01020 ME07575G00110 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03802G01020 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT4G051920 MT7G114570 | 2 | |
Tree-based ortholog | many-to-many | MT4G051920 MT7G114570 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G114570 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS01G65220 OS02G28074 OS03G58060 | 3 | |
Tree-based ortholog | many-to-many | OS01G65220 OS02G28074 OS03G58060 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G58060 | 1 | ||
Ostreococcus lucimarinus | Orthologous gene family | many-to-many | OL06G03410 OL06G03860 | 2 | |
Tree-based ortholog | many-to-many | OL16G02400 OL06G03860 OL06G03410 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL06G03860 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00018G01260 PP00509G00100 | 2 | |
Tree-based ortholog | many-to-many | PP00018G01260 PP00509G00100 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00509G00100 | 1 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT02G02410 PT05G04890 PT05G23750 ... | 5 | |
Tree-based ortholog | many-to-many | PT13G07020 PT13G03560 PT02G02410 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT05G04890 PT13G03560 | 2 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_001G37600 PPE_006G14330 PPE_006G34270 | 3 | |
Tree-based ortholog | many-to-many | PPE_006G34270 PPE_006G14330 PPE_001G37600 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G34270 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-many | RC30055G00940 RC30073G00230 RC30128G00400 ... | 4 | |
Tree-based ortholog | many-to-many | RC30128G00400 RC30170G05220 RC30055G00940 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30128G00400 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL04G049010 SL04G081280 SL12G089280 | 3 | |
Tree-based ortholog | many-to-many | SL12G089280 SL04G049010 SL04G081280 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G049010 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST04G016890 ST04G034660 ST12G027460 | 3 | |
Tree-based ortholog | many-to-many | ST12G027460 ST04G034660 ST04G016890 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G016890 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP1G12700 TP5G30760 | 2 | |
Tree-based ortholog | many-to-many | TP1G12700 TP5G30760 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G12700 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-many | TC0005G28820 TC0007G17930 TC0008G04060 | 3 | |
Tree-based ortholog | many-to-many | TC0007G17940 TC0008G04060 TC0007G17930 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G28820 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-many | VV06G09530 VV14G03630 VV16G06360 ... | 4 | |
Tree-based ortholog | many-to-many | VV08G05220 VV18G10350 VV16G06360 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV16G06360 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM03G08610 ZM04G30200 ZM05G02710 ... | 4 | |
Tree-based ortholog | many-to-many | ZM03G08610 ZM04G06870 ZM10G20660 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM05G02710 | 1 |