Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT1G50500
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G50500 AT1G50970 | 2 |  |
| Tree-based ortholog | AT1G50500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT1G50500 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00092G00850 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00092G00850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00092G00850 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G44990 AL1G45650 AL1G45680 | 3 | |
| Tree-based ortholog | 1-to-1 | AL1G44990 | 1 | ||
| Anchor point | N/A | AL1G44990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G44990 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV9G07470 | 1 | |
| Tree-based ortholog | 1-to-1 | BV9G07470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV9G07470 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-1 | BR05G18290 | 1 | |
| Tree-based ortholog | 1-to-1 | BR05G18290 | 1 | ||
| Anchor point | N/A | BR05G18290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR05G18290 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_001G37610 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_001G37610 | 1 | ||
| Anchor point | N/A | CRU_001G37610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G37610 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00122G00350 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00122G00350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00122G00350 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR06G02570 | 1 | |
| Tree-based ortholog | 1-to-1 | CR06G02570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR06G02570 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL11G10700 | 1 | |
| Tree-based ortholog | 1-to-1 | CL11G10700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G10700 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00131G00200 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00131G00200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00131G00200 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00092G00410 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00092G00410 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00092G00410 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0007G20910 EG0458G00010 | 2 | |
| Tree-based ortholog | 1-to-many | EG0458G00010 EG0007G20910 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0458G00010 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV6G35890 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G35890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G35890 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM09G02140 GM15G13040 | 2 | |
| Tree-based ortholog | 1-to-many | GM15G13040 GM09G02140 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM09G02140 GM15G13040 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR04G19000 | 1 | |
| Tree-based ortholog | 1-to-1 | GR04G19000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR04G19000 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ6G020830 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ6G020830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G020830 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD09G010120 MD17G010790 | 2 | |
| Tree-based ortholog | 1-to-many | MD09G010120 MD17G010790 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD17G010790 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME07330G00130 | 1 | |
| Tree-based ortholog | 1-to-1 | ME07330G00130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME07330G00130 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT2G028270 | 1 | |
| Tree-based ortholog | 1-to-1 | MT2G028270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G028270 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS01G67880 | 1 | |
| Tree-based ortholog | 1-to-1 | OS01G67880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G67880 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL20G01290 | 1 | |
| Tree-based ortholog | 1-to-1 | OL20G01290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL20G01290 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00008G01130 PP00274G00340 | 2 | |
| Tree-based ortholog | 1-to-many | PP00274G00340 PP00008G01130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00008G01130 PP00274G00340 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT16G02300 | 1 | |
| Tree-based ortholog | 1-to-1 | PT16G02300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT16G02300 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_003G17330 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_003G17330 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G17330 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC29670G00080 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29670G00080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29670G00080 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL04G049490 | 1 | |
| Tree-based ortholog | 1-to-1 | SL04G049490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G049490 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST04G014050 | 1 | |
| Tree-based ortholog | 1-to-1 | ST04G014050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G014050 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP1G37350 | 1 | |
| Tree-based ortholog | 1-to-1 | TP1G37350 | 1 | ||
| Anchor point | N/A | TP1G37350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G37350 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0003G23400 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0003G23400 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G23400 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV09G01060 | 1 | |
| Tree-based ortholog | 1-to-1 | VV09G01060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV09G01060 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM03G23690 | 1 | |
| Tree-based ortholog | 1-to-1 | ZM03G23700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM03G23700 | 1 |