Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT1G29900
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G29900 | 1 |  |
| Tree-based ortholog | AT1G29900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT1G29900 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00013G01700 | 1 | |
| Tree-based ortholog | 1-to-many | ATR_00020G00980 ATR_00013G01700 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00013G01700 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL1G30850 | 1 | |
| Tree-based ortholog | 1-to-1 | AL1G30850 | 1 | ||
| Anchor point | N/A | AL1G30850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G30850 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV0G66440 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G66440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G66440 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR09G28700 | 1 | |
| Tree-based ortholog | 1-to-1 | BR09G28700 | 1 | ||
| Anchor point | N/A | BR09G28700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G28700 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_001G26940 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_001G26940 | 1 | ||
| Anchor point | N/A | CRU_001G26940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G26940 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00081G00160 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00081G00160 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR08G00670 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR08G00670 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL09G21970 | 1 | |
| Tree-based ortholog | 1-to-1 | CL09G21970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL09G21970 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00014G01750 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00014G01750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00014G01750 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00019G01220 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00019G01220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00019G01220 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0006G38190 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0006G38190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G38190 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV1G29460 | 1 | |
| Tree-based ortholog | 1-to-1 | FV1G29460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G29460 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM13G40380 GM15G05021 | 2 | |
| Tree-based ortholog | 1-to-many | GM20G28700 GM13G40380 GM15G05021 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM13G40380 GM15G05021 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR02G06630 | 1 | |
| Tree-based ortholog | 1-to-1 | GR02G06630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR02G06630 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ4G047390 | 1 | |
| Malus domestica | Orthologous gene family | 1-to-1 | MD00G053790 | 1 | |
| Tree-based ortholog | 1-to-many | MD00G378730 MD00G053790 MD00G147840 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G378730 | 1 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME06327G00510 | 1 | |
| Tree-based ortholog | 1-to-1 | ME06327G00510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06327G00510 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT2G093280 | 1 | |
| Tree-based ortholog | 1-to-1 | MT2G093280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G093280 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS01G38970 | 1 | |
| Tree-based ortholog | 1-to-1 | OS01G38970 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G38970 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL08G02340 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL08G02340 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00043G00170 PP00343G00130 | 2 | |
| Tree-based ortholog | 1-to-many | PP00043G00170 PP00343G00130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00043G00170 PP00343G00130 | 2 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-1 | PT10G02310 | 1 | |
| Tree-based ortholog | 1-to-many | PT10G02310 PT08G21650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT10G02310 | 1 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_006G09250 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G09250 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC30111G00050 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30111G00050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30111G00050 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL06G075340 | 1 | |
| Tree-based ortholog | 1-to-1 | SL06G075340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G075340 | 1 | ||
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST12G025490 | 1 | |
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP1G25780 | 1 | |
| Tree-based ortholog | 1-to-1 | TP1G25780 | 1 | ||
| Anchor point | N/A | TP1G25780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G25780 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0007G09340 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0007G09340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0007G09340 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV06G04860 | 1 | |
| Tree-based ortholog | 1-to-1 | VV06G04860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV06G04860 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM03G37840 ZM08G22590 | 2 | |
| Tree-based ortholog | 1-to-many | ZM03G37840 ZM08G22590 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM03G37840 ZM08G22590 | 2 |