Integrative Orthology Viewer: AT1G18620 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT1G18620 AT1G74160 | 2 | |
Tree-based ortholog | AT1G18620 | 1 | ||
Anchor point | AT3G02170 AT1G74160 AT5G15580 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | AT1G18620 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00154G00520 | 1 | |
Tree-based ortholog | 1-to-1 | ATR_00154G00520 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00154G00520 | 1 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL1G19530 AL2G23100 | 2 | |
Tree-based ortholog | 1-to-1 | AL1G19530 | 1 | ||
Anchor point | many-to-many | AL1G19530 AL2G23100 AL6G15410 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G19530 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-1 | BV0G76200 | 1 | |
Tree-based ortholog | 1-to-1 | BV0G76200 | 1 | ||
Anchor point | many-to-many | BV2G01550 BV0G76200 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G76200 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR02G22550 BR09G46080 | 2 | |
Tree-based ortholog | 1-to-1 | BR09G46080 | 1 | ||
Anchor point | many-to-many | BR02G07530 BR02G22550 BR09G46080 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G22550 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_001G17470 CRU_002G19780 | 2 | |
Tree-based ortholog | 1-to-1 | CRU_001G17470 | 1 | ||
Anchor point | many-to-many | CRU_002G19780 CRU_003G01210 CRU_001G17470 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G17470 | 1 | ||
Carica papaya | Orthologous gene family | many-to-1 | CP00094G00590 | 1 | |
Tree-based ortholog | 1-to-1 | CP00094G00590 | 1 | ||
Anchor point | many-to-1 | CP00094G00590 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00094G00590 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-many | CL04G11510 CL06G16130 | 2 | |
Tree-based ortholog | 1-to-many | CL06G16130 CL04G11510 | 2 | ||
Anchor point | many-to-many | CL06G16130 CL11G14080 CL04G11510 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G11510 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00015G02650 CS00030G00960 | 2 | |
Tree-based ortholog | 1-to-1 | CS00030G00960 | 1 | ||
Anchor point | many-to-1 | CS00030G00960 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00030G00960 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00001G01290 CM00030G01570 | 2 | |
Tree-based ortholog | 1-to-many | CM00030G01570 CM00001G01290 | 2 | ||
Anchor point | many-to-1 | CM00030G01570 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00001G01290 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0002G05260 | 1 | |
Tree-based ortholog | 1-to-1 | EG0002G05260 | 1 | ||
Anchor point | many-to-many | EG0009G17110 EG0002G05260 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G05260 | 1 | ||
Fragaria vesca | Orthologous gene family | many-to-many | FV5G11910 FV6G42310 | 2 | |
Tree-based ortholog | 1-to-1 | FV5G11910 | 1 | ||
Anchor point | many-to-many | FV5G11910 FV6G42310 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G11910 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM04G32290 GM05G00280 GM06G22250 ... | 4 | |
Tree-based ortholog | 1-to-many | GM05G00280 GM17G08770 GM04G32290 ... | 4 | ||
Anchor point | many-to-many | GM04G32290 GM08G27191 GM05G00280 ... | 8 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM04G32290 GM06G22250 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR01G07660 GR06G26830 GR07G07020 ... | 4 | |
Tree-based ortholog | 1-to-many | GR01G07660 GR06G26830 | 2 | ||
Anchor point | many-to-many | GR01G07660 GR06G26830 GR12G04830 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR06G26830 | 1 | ||
Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G019120 | 1 | |
Malus domestica | Orthologous gene family | many-to-1 | MD14G020210 | 1 | |
Tree-based ortholog | 1-to-1 | MD06G016770 | 1 | ||
Anchor point | many-to-many | MD06G016770 MD14G020210 MD17G005220 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD14G020210 | 1 | ||
Manihot esculenta | Orthologous gene family | many-to-1 | ME04043G02010 | 1 | |
Tree-based ortholog | 1-to-many | ME08359G01570 ME06656G01020 | 2 | ||
Anchor point | many-to-many | ME06656G01020 ME08359G01570 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME06656G01020 ME08359G01570 | 2 | ||
Medicago truncatula | Orthologous gene family | many-to-1 | MT3G026110 | 1 | |
Tree-based ortholog | 1-to-1 | MT3G026110 | 1 | ||
Anchor point | many-to-1 | MT3G026110 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT3G026110 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS07G01860 | 1 | |
Tree-based ortholog | 1-to-many | OS07G01860 OS07G41200 OS03G30530 | 3 | ||
Anchor point | many-to-many | OS07G41200 OS03G30530 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS07G01860 | 1 | ||
Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00016G01940 PP00186G00240 | 2 | |
Populus trichocarpa | Orthologous gene family | many-to-many | PT12G06190 PT15G05890 PT17G09500 | 3 | |
Tree-based ortholog | 1-to-many | PT12G06190 PT15G05890 | 2 | ||
Anchor point | many-to-many | PT17G09500 PT12G06190 PT15G05890 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT12G06190 PT15G05890 | 2 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_003G23170 PPE_005G20990 | 2 | |
Tree-based ortholog | 1-to-1 | PPE_005G20990 | 1 | ||
Anchor point | many-to-many | PPE_005G20990 PPE_003G23170 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G20990 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-many | RC29905G00240 RC30138G01270 | 2 | |
Tree-based ortholog | 1-to-1 | RC30138G01270 | 1 | ||
Anchor point | many-to-1 | RC30138G01270 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30138G01270 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-1 | SL03G115000 | 1 | |
Tree-based ortholog | 1-to-1 | SL03G115000 | 1 | ||
Anchor point | many-to-many | SL03G115000 SL02G089030 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G115000 | 1 | ||
Solanum tuberosum | Tree-based ortholog | 1-to-1 | ST03G028520 | 1 | |
Anchor point | many-to-1 | ST03G028520 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G028520 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP1G16590 TP5G29370 | 2 | |
Tree-based ortholog | 1-to-1 | TP1G16590 | 1 | ||
Anchor point | many-to-many | TP1G16590 TP3G01250 TP5G29370 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G16590 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-many | TC0003G10720 TC0004G10200 | 2 | |
Tree-based ortholog | 1-to-1 | TC0003G10720 | 1 | ||
Anchor point | many-to-many | TC0003G10720 TC0004G10200 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G10720 | 1 | ||
Vitis vinifera | Tree-based ortholog | 1-to-1 | VV17G04630 | 1 | |
Anchor point | many-to-many | VV14G13090 VV17G04630 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV17G04630 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM02G27190 ZM07G08670 | 2 | |
Tree-based ortholog | 1-to-many | ZM02G27190 ZM07G08670 ZM02G38700 ... | 4 | ||
Anchor point | many-to-1 | ZM07G26600 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM07G08670 | 1 |