Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT1G07440
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT1G07440 | 1 |  |
| Tree-based ortholog | AT1G07440 | 1 | ||
| Anchor point | AT5G06060 AT2G29150 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT1G07440 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00006G00740 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ATR_00012G03150 ATR_00012G03140 ATR_00012G03100 ... | 5 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL1G07030 | 1 | |
| Tree-based ortholog | 1-to-1 | AL1G07030 | 1 | ||
| Anchor point | many-to-many | AL4G13670 AL1G07030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G07030 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-many | BV7G05980 BV7G05990 BV0G06350 | 3 | |
| Anchor point | many-to-1 | BV7G05980 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV7G05990 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR10G00720 | 1 | |
| Tree-based ortholog | 1-to-many | BR09G16250 BR09G16260 BR02G17840 | 3 | ||
| Anchor point | many-to-many | BR10G24250 BR05G14050 BR09G52110 ... | 7 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR10G00720 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-many | CRU_001G04200 CRU_001G06360 | 2 | |
| Tree-based ortholog | 1-to-many | CRU_001G04200 CRU_001G06360 | 2 | ||
| Anchor point | many-to-many | CRU_001G06360 CRU_004G09950 CRU_006G04810 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CRU_001G06360 CRU_001G04200 | 2 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00081G00940 | 1 | |
| Anchor point | many-to-1 | CP00081G00930 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00019G02710 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-many | CR16G08900 CR17G07880 CR07G03120 ... | 9 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR16G08900 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-many | CL03G01270 CL07G03270 | 2 | |
| Anchor point | many-to-many | CL10G19350 CL07G03270 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL07G03270 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00163G00270 | 1 | |
| Anchor point | many-to-1 | CS00026G00080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00026G00100 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-many | CM00044G01420 CM00063G00930 | 2 | |
| Anchor point | many-to-many | CM00011G01550 CM00063G00930 CM00044G01420 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00063G00930 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-many | EG0010G17410 EG0010G17500 EG0010G17460 ... | 15 | |
| Anchor point | many-to-many | EG0010G17390 EG0002G18350 EG0011G25780 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0010G17390 EG0010G17470 EG0010G17450 ... | 9 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV3G29400 | 1 | |
| Anchor point | many-to-1 | FV3G29360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | FV2G41350 FV3G29360 | 2 | ||
| Glycine max | Tree-based ortholog | 1-to-1 | GM18G03961 | 1 | |
| Anchor point | many-to-many | GM11G34270 GM18G40480 GM07G16310 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM12G06310 GM12G06300 GM12G06320 | 3 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR09G09630 GR13G26260 GR13G26250 ... | 7 | |
| Anchor point | many-to-many | GR12G07210 GR09G09630 GR06G17090 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR13G26210 GR13G26240 GR13G26260 ... | 4 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ3G045470 | 1 | |
| Anchor point | many-to-1 | LJ3G045470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G045470 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD00G085110 MD04G010270 | 2 | |
| Anchor point | many-to-many | MD12G013710 MD03G006210 MD04G010270 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD04G010290 | 1 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-1 | ME03150G00910 | 1 | |
| Anchor point | many-to-many | ME07991G00970 ME03150G00910 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03150G00910 | 1 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-1 | MT4G064887 | 1 | |
| Anchor point | many-to-1 | MT4G064883 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G064887 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-many | OS03G16210 OS03G16220 OS03G16230 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS03G16210 OS03G16220 | 2 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-many | OL03G03350 OL08G04180 OL01G02200 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL03G03350 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00457G00070 PP06715G00010 PP00040G00290 ... | 9 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00457G00070 | 1 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT10G14260 PT08G10700 PT05G03930 ... | 7 | |
| Anchor point | many-to-many | PT06G08970 PT08G05910 PT10G19970 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT01G24500 | 1 | ||
| Prunus persica | Tree-based ortholog | 1-to-many | PPE_006G06810 PPE_006G06770 PPE_006G06840 ... | 8 | |
| Anchor point | many-to-many | PPE_002G23060 PPE_006G06750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PPE_006G06900 PPE_006G06770 PPE_006G06780 ... | 7 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC29751G00850 | 1 | |
| Anchor point | many-to-1 | RC29751G00830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29751G00830 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL06G005720 SL06G083470 SL06G083480 ... | 6 | |
| Anchor point | many-to-many | SL09G011130 SL10G086620 SL06G005720 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G096640 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST06G005170 ST06G005190 ST06G033920 ... | 8 | |
| Anchor point | many-to-many | ST10G027960 ST06G005170 ST09G008830 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST09G008830 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP7G15310 | 1 | |
| Tree-based ortholog | 1-to-1 | TP7G15310 | 1 | ||
| Anchor point | many-to-many | TP4G12040 TP1G06180 TP6G36850 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP7G15310 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-many | TC0009G30970 TC0009G30980 TC0009G31000 ... | 8 | |
| Anchor point | many-to-many | TC0005G03200 TC0009G30920 TC0010G03690 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TC0009G30920 TC0009G30940 TC0009G30950 ... | 4 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-many | VV13G04860 VV13G04870 | 2 | |
| Anchor point | many-to-many | VV06G03030 VV08G14110 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV06G02960 VV06G02910 VV06G02990 ... | 5 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM01G10990 | 1 | |
| Anchor point | many-to-1 | ZM04G00050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G10990 | 1 |