Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL8G30390
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL6G08750 AL8G30390 | 2 |  |
| Tree-based ortholog | AL8G30390 | 1 | ||
| Anchor point | AL6G08750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL8G30390 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00017G02650 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00017G02650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00017G02650 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT5G08750 AT5G63780 | 2 | |
| Tree-based ortholog | 1-to-1 | AT5G63780 | 1 | ||
| Anchor point | 1-to-many | AT5G63780 AT5G08750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G63780 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV4G07460 | 1 | |
| Tree-based ortholog | 1-to-1 | BV4G07460 | 1 | ||
| Anchor point | 1-to-1 | BV4G07460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV4G07460 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR06G21800 BR09G06600 BR10G26330 | 3 | |
| Tree-based ortholog | 1-to-many | BR09G06600 BR06G21800 | 2 | ||
| Anchor point | 1-to-many | BR06G21800 BR09G06600 BR02G39360 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR06G21800 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_006G07540 CRU_008G23860 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_008G23860 | 1 | ||
| Anchor point | 1-to-many | CRU_008G23860 CRU_006G07540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G23860 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00037G00300 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00037G00300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00037G00300 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL04G01940 | 1 | |
| Tree-based ortholog | 1-to-1 | CL04G01940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G01940 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00166G00110 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00166G00110 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00166G00110 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00010G01550 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00010G01550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00010G01550 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0008G41160 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0008G41160 | 1 | ||
| Anchor point | 1-to-1 | EG0008G41160 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0008G41160 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV1G25300 | 1 | |
| Tree-based ortholog | 1-to-1 | FV1G25300 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G25300 | 1 | ||
| Glycine max | Orthologous gene family | many-to-1 | GM08G00500 | 1 | |
| Tree-based ortholog | 1-to-1 | GM08G00500 | 1 | ||
| Anchor point | 1-to-1 | GM08G00500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM08G00500 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR12G03730 | 1 | |
| Tree-based ortholog | 1-to-1 | GR12G03730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR12G03730 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G041650 | 1 | |
| Malus domestica | Orthologous gene family | many-to-1 | MD15G007360 | 1 | |
| Tree-based ortholog | 1-to-1 | MD15G007360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD15G007360 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME04745G00010 | 1 | |
| Tree-based ortholog | 1-to-1 | ME04745G00010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME04745G00010 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT8G094610 | 1 | |
| Tree-based ortholog | 1-to-1 | MT8G094610 | 1 | ||
| Anchor point | 1-to-1 | MT8G094610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G094610 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS04G59580 | 1 | |
| Tree-based ortholog | 1-to-1 | OS04G59580 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS04G59580 | 1 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00316G00220 PP00003G00310 | 2 | |
| Populus trichocarpa | Orthologous gene family | many-to-many | PT05G07010 PT07G09890 | 2 | |
| Tree-based ortholog | 1-to-many | PT05G07010 PT07G09890 | 2 | ||
| Anchor point | 1-to-1 | PT05G07010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT05G07010 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_004G31510 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_004G31510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G31510 | 1 | ||
| Ricinus communis | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30026G00110 | 1 | |
| Solanum lycopersicum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G006060 | 1 | |
| Solanum tuberosum | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G005090 | 1 | |
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP6G34120 | 1 | |
| Tree-based ortholog | 1-to-1 | TP2G26850 | 1 | ||
| Anchor point | 1-to-many | TP2G26850 TP6G34120 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G26850 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G13690 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0001G13690 | 1 | ||
| Anchor point | 1-to-1 | TC0001G13690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G13690 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV07G07420 | 1 | |
| Tree-based ortholog | 1-to-1 | VV07G07420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV07G07420 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM10G27180 | 1 | |
| Tree-based ortholog | 1-to-1 | ZM10G27180 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM10G27180 | 1 |