Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL4G12920
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL0G05470 AL4G12920 AL8G26350 | 3 |  |
| Tree-based ortholog | AL4G12920 | 1 | ||
| Anchor point | AL5G25080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL4G12920 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-many | ATR_00058G02290 ATR_00035G00430 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00058G02290 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT2G28550 | 1 | |
| Tree-based ortholog | 1-to-1 | AT2G28550 | 1 | ||
| Anchor point | 1-to-1 | AT2G28550 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G28550 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-many | BV0G24190 BV0G68980 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G24190 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G23350 BR07G13290 | 2 | |
| Tree-based ortholog | 1-to-many | BR03G23350 BR07G13290 | 2 | ||
| Anchor point | 1-to-many | BR03G23350 BR09G35910 BR07G13290 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR07G13290 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_004G09310 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_004G09310 | 1 | ||
| Anchor point | 1-to-1 | CRU_004G09310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_004G09310 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00139G00430 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00139G00430 | 1 | ||
| Anchor point | 1-to-1 | CP00139G00430 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00139G00430 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-many | CR01G02270 CR01G02250 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR01G02270 CR01G02250 | 2 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL02G20910 | 1 | |
| Tree-based ortholog | 1-to-1 | CL02G14130 | 1 | ||
| Anchor point | 1-to-many | CL04G08650 CL10G18600 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL02G20910 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00014G01540 | 1 | |
| Tree-based ortholog | 1-to-many | CS00014G01540 CS00423G00010 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00014G01540 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00082G00490 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00016G00160 | 1 | ||
| Anchor point | 1-to-many | CM00011G02330 CM00082G00490 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00082G00490 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0002G19710 EG0010G18320 | 2 | |
| Tree-based ortholog | 1-to-many | EG0001G09590 EG0010G18320 EG0002G19710 ... | 4 | ||
| Anchor point | 1-to-many | EG0010G18320 EG0002G19710 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G19710 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV3G30200 | 1 | |
| Tree-based ortholog | 1-to-1 | FV3G30200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G30200 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM11G15650 GM12G07800 GM13G40470 ... | 4 | |
| Tree-based ortholog | 1-to-many | GM10G22390 GM02G09600 | 2 | ||
| Anchor point | 1-to-many | GM11G15650 GM15G04930 GM19G36200 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM11G15650 GM15G04930 GM12G07800 ... | 4 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR04G00210 GR09G10420 | 2 | |
| Tree-based ortholog | 1-to-1 | GR03G13980 | 1 | ||
| Anchor point | 1-to-many | GR09G10420 GR03G13980 GR02G25150 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G10420 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ1G063730 | 1 | |
| Anchor point | 1-to-1 | LJ1G063730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G063730 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD03G008070 MD11G009450 | 2 | |
| Tree-based ortholog | 1-to-many | MD01G009520 MD00G214990 MD07G015500 | 3 | ||
| Anchor point | 1-to-many | MD12G012140 MD11G009450 MD03G008070 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD11G009450 MD03G008070 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00506G00150 ME03750G00480 | 2 | |
| Tree-based ortholog | 1-to-1 | ME02538G00150 | 1 | ||
| Anchor point | 1-to-many | ME00506G00150 ME03750G00480 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME00506G00150 ME03750G00480 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT2G093060 MT4G061200 | 2 | |
| Tree-based ortholog | 1-to-many | MT7G060560 MT3G090510 | 2 | ||
| Anchor point | 1-to-many | MT4G061200 MT2G093060 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G061200 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS05G03040 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS07G13170 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-many | OL21G01100 OL13G01880 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL08G04120 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-1 | PP00083G00460 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00066G01400 PP00066G01300 PP00131G00760 ... | 4 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT16G08450 PT06G13240 PT08G04530 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT16G08450 PT06G13240 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_006G08960 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_006G08960 | 1 | ||
| Anchor point | 1-to-1 | PPE_006G08960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_006G08960 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC28752G00190 | 1 | |
| Tree-based ortholog | 1-to-1 | RC29923G00420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC28752G00190 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL06G075510 SL11G072600 | 2 | |
| Tree-based ortholog | 1-to-1 | SL11G072600 | 1 | ||
| Anchor point | 1-to-many | SL06G075510 SL10G084340 SL11G072600 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G075510 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST11G029540 | 1 | |
| Tree-based ortholog | 1-to-1 | ST11G029540 | 1 | ||
| Anchor point | 1-to-1 | ST11G029540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST11G029540 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP4G11380 | 1 | |
| Tree-based ortholog | 1-to-1 | TP4G11380 | 1 | ||
| Anchor point | 1-to-1 | TP4G11380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP4G11380 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0009G33000 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0009G33000 | 1 | ||
| Anchor point | 1-to-1 | TC0009G33000 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G33000 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV06G04650 | 1 | |
| Tree-based ortholog | 1-to-many | VV08G01770 VV06G04650 | 2 | ||
| Anchor point | 1-to-1 | VV06G04650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV06G04650 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM06G04030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G57720 | 1 |