Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL3G31730
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G32840 AL3G31730 AL7G23410 | 3 |  |
| Tree-based ortholog | AL3G31730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL3G31730 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00024G02060 ATR_00048G01710 | 2 | |
| Tree-based ortholog | 1-to-1 | ATR_00024G02060 | 1 | ||
| Anchor point | N/A | ATR_00024G02060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00024G02060 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT2G06510 AT4G19130 AT5G45400 | 3 | |
| Tree-based ortholog | 1-to-1 | AT2G06510 | 1 | ||
| Anchor point | N/A | AT2G06510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT2G06510 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV0G29940 BV5G18570 | 2 | |
| Tree-based ortholog | 1-to-1 | BV0G29940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G29940 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR02G27980 BR09G23420 | 2 | |
| Tree-based ortholog | 1-to-many | BR07G02740 BR02G27980 BR09G23420 ... | 5 | ||
| Anchor point | N/A | BR07G02740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BR02G27980 BR09G23420 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_003G26240 CRU_008G02610 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_003G26240 | 1 | ||
| Anchor point | N/A | CRU_003G26240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G26240 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00028G00730 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00028G00730 | 1 | ||
| Anchor point | N/A | CP00028G00730 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00028G00730 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR17G05040 | 1 | |
| Tree-based ortholog | 1-to-many | CR16G02040 CR17G05040 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR17G05040 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL10G01100 | 1 | |
| Tree-based ortholog | 1-to-many | CL10G01100 CL06G16160 CL11G17440 | 3 | ||
| Anchor point | N/A | CL11G17440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL10G01100 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00140G00100 CS00210G00100 | 2 | |
| Tree-based ortholog | 1-to-1 | CS00140G00100 | 1 | ||
| Anchor point | N/A | CS00140G00100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00140G00100 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00021G01040 | 1 | |
| Tree-based ortholog | 1-to-many | CM00021G01040 CM00030G01540 | 2 | ||
| Anchor point | N/A | CM00003G07790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00021G01040 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0003G27620 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G27620 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G28580 | 1 | |
| Tree-based ortholog | 1-to-1 | FV1G09880 | 1 | ||
| Anchor point | N/A | FV1G09880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G09880 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM09G07850 GM15G19090 | 2 | |
| Anchor point | N/A | GM09G07850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM15G19090 | 1 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR08G22030 GR13G22570 | 2 | |
| Tree-based ortholog | 1-to-1 | GR13G22570 | 1 | ||
| Anchor point | N/A | GR13G22570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G22570 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-many | LJ4G036440 LJ6G016470 | 2 | |
| Tree-based ortholog | 1-to-1 | LJ4G036440 | 1 | ||
| Anchor point | N/A | LJ6G016470 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ6G016470 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD15G015510 MD00G460900 MD00G460870 | 3 | |
| Anchor point | N/A | MD15G015510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G460870 MD15G015510 MD00G460900 | 3 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME07318G00030 | 1 | |
| Tree-based ortholog | 1-to-1 | ME07318G00030 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME07318G00030 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT2G041270 MT3G047950 | 2 | |
| Tree-based ortholog | 1-to-many | MT2G041270 MT3G047950 | 2 | ||
| Anchor point | N/A | MT2G041270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G041270 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS02G53680 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS02G53680 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL17G01510 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OL14G01050 OL14G01720 | 2 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00192G00150 PP00222G00560 PP00257G00010 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00222G00560 PP00192G00150 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT03G10270 | 1 | |
| Tree-based ortholog | 1-to-1 | PT18G06530 | 1 | ||
| Anchor point | N/A | PT06G14390 PT18G06530 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT18G06530 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_005G02220 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_007G22230 | 1 | ||
| Anchor point | N/A | PPE_007G22230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G22230 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC29912G00030 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29912G00030 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL05G025590 SL08G075840 | 2 | |
| Tree-based ortholog | 1-to-1 | SL05G025590 | 1 | ||
| Anchor point | N/A | SL05G025590 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL05G025590 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST05G017040 | 1 | |
| Tree-based ortholog | 1-to-1 | ST05G017040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST05G017040 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP2G10350 | 1 | |
| Tree-based ortholog | 1-to-1 | TP3G24710 | 1 | ||
| Anchor point | N/A | TP3G24710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G24710 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0003G31190 TC0009G07640 | 2 | |
| Tree-based ortholog | 1-to-1 | TC0009G07640 | 1 | ||
| Anchor point | N/A | TC0009G07630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G07640 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV11G02810 | 1 | |
| Tree-based ortholog | 1-to-1 | VV11G02810 | 1 | ||
| Anchor point | N/A | VV11G02810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV11G02810 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-1 | ZM04G26650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G26650 | 1 |