Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL3G13360
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL3G13360 | 1 |  |
| Tree-based ortholog | AL3G13360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL3G13360 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00032G00620 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00032G00620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00032G00620 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT3G12920 | 1 | |
| Tree-based ortholog | 1-to-1 | AT3G12920 | 1 | ||
| Anchor point | N/A | AT3G12920 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT3G12920 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV0G21900 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G21900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G21900 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-many | BR00G00160 BR05G29950 | 2 | |
| Tree-based ortholog | 1-to-many | BR03G33220 BR05G29950 BR00G00160 | 3 | ||
| Anchor point | N/A | BR00G00160 BR05G29950 BR03G33220 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR05G29950 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_003G11740 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_003G11740 | 1 | ||
| Anchor point | N/A | CRU_003G11740 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G11740 | 1 | ||
| Carica papaya | Tree-based ortholog | 1-to-1 | CP00135G00380 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00135G00380 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL09G22780 | 1 | |
| Tree-based ortholog | 1-to-many | CL02G18640 CL09G22780 | 2 | ||
| Anchor point | N/A | CL02G18640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL09G22780 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00310G00080 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00310G00080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00310G00080 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00017G01360 | 1 | |
| Tree-based ortholog | 1-to-many | CM00039G00970 CM00017G01360 | 2 | ||
| Anchor point | N/A | CM00017G01360 CM00039G00970 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00017G01360 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-many | EG0006G11620 EG0006G26830 | 2 | |
| Tree-based ortholog | 1-to-1 | EG0006G11620 | 1 | ||
| Anchor point | N/A | EG0006G11620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G11620 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV3G17450 | 1 | |
| Tree-based ortholog | 1-to-1 | FV3G17450 | 1 | ||
| Anchor point | N/A | FV3G17450 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G17450 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-1 | GM15G40810 | 1 | |
| Tree-based ortholog | 1-to-many | GM15G40810 GM08G18150 | 2 | ||
| Anchor point | N/A | GM08G18150 GM15G40810 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM15G40810 | 1 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR02G03650 | 1 | |
| Tree-based ortholog | 1-to-many | GR02G03650 GR09G35540 | 2 | ||
| Anchor point | N/A | GR02G03650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR02G03650 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ3G014760 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ3G014760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ3G014760 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-many | MD05G011100 MD10G016540 | 2 | |
| Tree-based ortholog | 1-to-many | MD10G016540 MD05G011100 MD00G490240 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD05G011100 MD10G016540 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME10963G00990 | 1 | |
| Tree-based ortholog | 1-to-many | ME05219G00100 ME10963G00990 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME10963G00990 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT2G069350 | 1 | |
| Tree-based ortholog | 1-to-1 | MT2G069350 | 1 | ||
| Anchor point | N/A | MT2G069350 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT2G069350 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS03G46570 | 1 | |
| Tree-based ortholog | 1-to-1 | OS03G46570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS03G46570 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00129G00240 PP00004G01660 PP00170G00410 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00071G00080 PP00003G01050 PP00129G00240 ... | 5 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT01G43920 PT01G43960 PT11G14270 | 3 | |
| Tree-based ortholog | 1-to-many | PT01G43920 PT01G43960 PT11G14270 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT11G14270 PT01G43960 PT01G43920 | 3 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_004G13270 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_004G13270 | 1 | ||
| Anchor point | N/A | PPE_004G13270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G13270 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC30169G01240 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30169G01240 | 1 | ||
| Anchor point | N/A | RC30169G01240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30169G01240 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL02G031710 SL02G069180 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL02G031710 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST02G006200 ST02G015380 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST02G006200 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP3G11060 | 1 | |
| Tree-based ortholog | 1-to-1 | TP3G11060 | 1 | ||
| Anchor point | N/A | TP3G11060 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G11060 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0007G14190 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0007G14190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0007G14190 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV19G08630 | 1 | |
| Tree-based ortholog | 1-to-1 | VV19G08630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV19G08630 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM01G47950 ZM05G06630 | 2 | |
| Tree-based ortholog | 1-to-many | ZM05G06630 ZM01G47950 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM02G16600 | 1 |