Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL2G28810
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL2G28810 AL6G25110 | 2 |  |
| Tree-based ortholog | AL2G28810 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL2G28810 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00019G00360 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00019G00360 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G79710 AT5G25040 AT5G25050 | 3 | |
| Tree-based ortholog | 1-to-1 | AT1G79710 | 1 | ||
| Anchor point | N/A | AT1G79710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G79710 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV2G13480 BV8G00570 | 2 | |
| Tree-based ortholog | 1-to-1 | BV8G00570 | 1 | ||
| Anchor point | N/A | BV8G00570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV8G00570 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR02G37020 BR06G26260 BR07G34200 | 3 | |
| Tree-based ortholog | 1-to-1 | BR07G34200 | 1 | ||
| Anchor point | N/A | BR07G34200 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR07G34200 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_002G25130 CRU_006G22180 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_002G25130 | 1 | ||
| Anchor point | N/A | CRU_002G25130 CRU_006G09070 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G25130 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00148G00320 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00148G00320 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00148G00320 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-many | CR14G01800 CR06G15730 CR03G04710 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR01G01830 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL08G13520 | 1 | |
| Tree-based ortholog | 1-to-1 | CL08G13520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL08G13520 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00025G01230 CS00025G01280 | 2 | |
| Tree-based ortholog | 1-to-1 | CS00025G01230 | 1 | ||
| Anchor point | N/A | CS00025G01230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00025G01230 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00014G06760 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00014G06760 | 1 | ||
| Anchor point | N/A | CM00014G06720 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00014G06760 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0003G15060 EG0003G15070 EG0003G15080 | 3 | |
| Tree-based ortholog | 1-to-many | EG0003G15080 EG0003G15070 EG0003G15060 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G15060 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV6G24080 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G24080 | 1 | ||
| Anchor point | N/A | FV6G24080 FV2G52440 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G24080 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM14G11670 GM14G13070 GM17G33360 | 3 | |
| Tree-based ortholog | 1-to-many | GM14G13070 GM17G33360 | 2 | ||
| Anchor point | N/A | GM14G13070 GM17G33360 GM17G34120 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM14G13070 GM17G33360 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR09G06370 GR09G06390 GR09G12210 | 3 | |
| Tree-based ortholog | 1-to-1 | GR09G12210 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR09G06380 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ5G006900 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ5G006900 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G006900 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-1 | MD08G004270 | 1 | |
| Tree-based ortholog | 1-to-1 | MD08G004270 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD08G004270 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME00847G02460 ME02915G00090 | 2 | |
| Tree-based ortholog | 1-to-1 | ME02915G00090 | 1 | ||
| Anchor point | N/A | ME02915G00090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME02915G00090 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT1G014250 | 1 | |
| Tree-based ortholog | 1-to-1 | MT1G014250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT1G014250 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS04G42130 OS06G08750 | 2 | |
| Tree-based ortholog | 1-to-many | OS04G42130 OS06G08750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS06G08750 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | 1-to-many | OL07G04490 OL07G04480 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL07G00440 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-1 | PP00050G00040 | 1 | |
| Tree-based ortholog | 1-to-1 | PP00050G00040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00050G00040 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G04160 PT06G26600 PT18G01710 | 3 | |
| Tree-based ortholog | 1-to-1 | PT01G04160 | 1 | ||
| Anchor point | N/A | PT03G18520 PT01G04160 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT06G26600 PT18G01710 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_001G40250 PPE_003G09240 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_003G09240 | 1 | ||
| Anchor point | N/A | PPE_001G40190 PPE_003G09240 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G09240 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC29848G00770 RC30131G00370 | 2 | |
| Tree-based ortholog | 1-to-1 | RC30131G00370 | 1 | ||
| Anchor point | N/A | RC30131G00370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30131G00370 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL06G068560 SL08G006680 | 2 | |
| Tree-based ortholog | 1-to-many | SL03G117700 SL06G068560 | 2 | ||
| Anchor point | N/A | SL03G117700 SL06G068560 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G068560 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST03G031170 ST06G025380 ST08G007920 | 3 | |
| Tree-based ortholog | 1-to-many | ST03G031170 ST06G025380 | 2 | ||
| Anchor point | N/A | ST03G031170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST06G025380 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP2G22470 TP5G34770 | 2 | |
| Tree-based ortholog | 1-to-1 | TP5G34770 | 1 | ||
| Anchor point | N/A | TP5G34770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G34770 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0006G04650 TC0009G01350 TC0009G01360 | 3 | |
| Tree-based ortholog | 1-to-1 | TC0006G04650 | 1 | ||
| Anchor point | N/A | TC0009G01350 TC0006G04650 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0006G04650 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV04G13290 VV09G01090 | 2 | |
| Tree-based ortholog | 1-to-1 | VV09G01090 | 1 | ||
| Anchor point | N/A | VV09G01090 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV04G13290 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM02G10980 | 1 | |
| Tree-based ortholog | 1-to-many | ZM02G10980 ZM09G02620 | 2 | ||
| Anchor point | N/A | ZM05G21180 ZM02G10980 ZM07G14570 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM02G10980 | 1 |