Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL2G01460
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G00630 AL2G01460 | 2 |  |
| Tree-based ortholog | AL2G01460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL2G01460 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00009G01840 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00009G01840 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G01650 AT1G63690 | 2 | |
| Tree-based ortholog | 1-to-1 | AT1G63690 | 1 | ||
| Anchor point | N/A | AT1G63690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G63690 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV1G06540 BV6G15340 | 2 | |
| Tree-based ortholog | 1-to-1 | BV6G15340 | 1 | ||
| Anchor point | N/A | BV1G06540 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV6G15340 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR09G11310 BR09G54870 BR10G06320 | 3 | |
| Tree-based ortholog | 1-to-1 | BR09G11310 | 1 | ||
| Anchor point | N/A | BR09G11310 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR09G11310 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G00520 CRU_002G01160 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_002G01160 | 1 | ||
| Anchor point | N/A | CRU_002G01160 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_002G01160 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00011G00100 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00074G00070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00011G00100 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | many-to-1 | CR07G05100 | 1 | |
| Tree-based ortholog | 1-to-1 | CR07G05100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR07G05100 | 1 | ||
| Citrullus lanatus | Tree-based ortholog | 1-to-1 | CL01G02420 | 1 | |
| Anchor point | N/A | CL01G02420 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL01G02420 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-many | CS00001G03170 CS00009G01060 | 2 | |
| Tree-based ortholog | 1-to-1 | CS00009G01060 | 1 | ||
| Anchor point | N/A | CS00009G01060 CS00001G03170 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00009G01060 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-many | CM00005G06570 CM00047G00710 | 2 | |
| Tree-based ortholog | 1-to-1 | CM00005G06570 | 1 | ||
| Anchor point | N/A | CM00005G06570 CM00047G00710 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00047G00710 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0004G14800 EG0004G18980 | 2 | |
| Tree-based ortholog | 1-to-1 | EG0004G14800 | 1 | ||
| Anchor point | N/A | EG0004G14800 EG0004G18980 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G14800 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV5G02990 | 1 | |
| Anchor point | N/A | FV5G02990 FV7G07970 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV5G02990 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM01G42940 GM03G01100 GM07G07610 ... | 6 | |
| Tree-based ortholog | 1-to-many | GM09G39500 GM18G46760 GM03G01100 ... | 4 | ||
| Anchor point | N/A | GM09G39500 GM07G07610 GM11G02540 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM11G02540 GM01G42940 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR01G16910 GR03G15820 GR04G15880 ... | 5 | |
| Tree-based ortholog | 1-to-1 | GR04G21270 | 1 | ||
| Anchor point | N/A | GR04G15880 GR04G21260 GR03G15820 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR08G24750 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ3G033440 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G041800 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-many | MD00G399830 MD01G005190 MD15G029410 | 3 | |
| Tree-based ortholog | 1-to-many | MD00G146080 MD00G146040 MD00G399830 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G146080 | 1 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME02658G01200 ME03581G01710 ME08159G00020 | 3 | |
| Tree-based ortholog | 1-to-many | ME05280G00440 ME08159G00020 | 2 | ||
| Anchor point | N/A | ME05280G00440 ME03581G01710 ME02658G01200 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME03581G01710 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT6G463340 MT7G077800 MT8G030680 | 3 | |
| Tree-based ortholog | 1-to-many | MT7G077800 MT8G030680 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT6G463340 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS11G24540 | 1 | |
| Tree-based ortholog | 1-to-many | OS06G51430 OS02G57710 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS06G51430 OS02G57710 | 2 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL04G01460 | 1 | |
| Tree-based ortholog | 1-to-1 | OL04G01460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL04G01460 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00001G02190 PP00102G00270 PP00128G00430 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00102G00270 PP00001G02190 PP00124G00100 ... | 4 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT01G10310 PT02G16050 PT03G12850 ... | 4 | |
| Tree-based ortholog | 1-to-many | PT01G10310 PT03G12850 | 2 | ||
| Anchor point | N/A | PT01G10310 PT03G12850 PT14G08530 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT01G10310 PT03G12850 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-many | PPE_002G16640 PPE_005G11030 | 2 | |
| Tree-based ortholog | 1-to-1 | PPE_005G11030 | 1 | ||
| Anchor point | N/A | PPE_005G11030 PPE_002G16640 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_005G11030 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-many | RC30174G02930 RC30190G03960 | 2 | |
| Tree-based ortholog | 1-to-1 | RC30190G03960 | 1 | ||
| Anchor point | N/A | RC30174G02930 RC30190G03960 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30190G03960 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL01G094680 SL08G081180 SL10G012430 | 3 | |
| Tree-based ortholog | 1-to-many | SL08G081180 SL01G094680 SL10G012430 | 3 | ||
| Anchor point | N/A | SL08G081180 SL01G094680 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL08G081180 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-many | ST01G032070 ST08G029260 ST10G012540 | 3 | |
| Tree-based ortholog | 1-to-many | ST08G029260 ST01G032070 ST10G012540 | 3 | ||
| Anchor point | N/A | ST01G032070 ST08G029260 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST08G029260 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G00670 TP2G00960 | 2 | |
| Tree-based ortholog | 1-to-1 | TP2G00960 | 1 | ||
| Anchor point | N/A | TP2G00960 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G00960 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0001G35540 TC0003G27610 | 2 | |
| Tree-based ortholog | 1-to-1 | TC0003G27610 | 1 | ||
| Anchor point | N/A | TC0001G35540 TC0003G27610 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0003G27610 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-many | VV02G06370 VV15G05030 | 2 | |
| Tree-based ortholog | 1-to-1 | VV02G06370 | 1 | ||
| Anchor point | N/A | VV02G06370 VV15G05030 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV02G06370 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM02G22800 ZM04G24730 ZM05G16620 | 3 | |
| Tree-based ortholog | 1-to-many | ZM05G16620 ZM04G24730 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM04G24730 | 1 |