Integrative Orthology Viewer: AL1G21720 (Arabidopsis lyrata)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis lyrata | Orthologous gene family | AL1G21720 AL2G25230 | 2 | |
Tree-based ortholog | AL1G21720 | 1 | ||
Anchor point | AL3G38400 AL7G05250 AL2G25230 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | AL1G21720 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00001G00150 | 1 | |
Tree-based ortholog | 1-to-1 | ATR_00001G00150 | 1 | ||
Anchor point | many-to-1 | ATR_00001G00150 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00001G00150 | 1 | ||
Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G20610 AT1G76310 | 2 | |
Tree-based ortholog | 1-to-many | AT1G20590 AT1G20610 | 2 | ||
Anchor point | many-to-many | AT1G76310 AT2G17620 AT4G35620 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G20610 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV6G17560 BV6G17570 | 2 | |
Tree-based ortholog | 1-to-many | BV6G17570 BV6G17560 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BV6G17570 BV6G17560 | 2 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR06G14870 BR07G19680 BR07G31560 ... | 5 | |
Tree-based ortholog | 1-to-many | BR08G25080 BR06G14870 | 2 | ||
Anchor point | many-to-many | BR06G24490 BR06G14870 BR08G25080 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR08G25080 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_001G19260 CRU_002G21900 CRU_003G30490 | 3 | |
Tree-based ortholog | 1-to-1 | CRU_001G19260 | 1 | ||
Anchor point | many-to-many | CRU_003G30490 CRU_001G19260 CRU_002G21900 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G19260 | 1 | ||
Carica papaya | Tree-based ortholog | 1-to-many | CP00055G01860 CP00535G00030 | 2 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00055G01860 | 1 | ||
Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR08G03470 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G12650 | 1 | ||
Citrullus lanatus | Orthologous gene family | many-to-many | CL01G21050 CL11G12630 | 2 | |
Tree-based ortholog | 1-to-1 | CL11G12630 | 1 | ||
Anchor point | many-to-many | CL11G12630 CL01G21050 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL11G12630 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-1 | CS00002G06630 | 1 | |
Tree-based ortholog | 1-to-1 | CS00002G06630 | 1 | ||
Anchor point | many-to-many | CS00023G01790 CS00002G06630 CS00017G02100 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00002G06630 | 1 | ||
Cucumis melo | Orthologous gene family | many-to-1 | CM00029G04050 | 1 | |
Tree-based ortholog | 1-to-1 | CM00029G04050 | 1 | ||
Anchor point | many-to-many | CM00007G10060 CM00029G04050 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00029G04050 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0006G14450 | 1 | |
Tree-based ortholog | 1-to-1 | EG0006G14450 | 1 | ||
Anchor point | many-to-many | EG0010G21930 EG0006G14450 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G14450 | 1 | ||
Fragaria vesca | Tree-based ortholog | 1-to-1 | FV2G12010 | 1 | |
Anchor point | many-to-1 | FV2G12010 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV1G12350 | 1 | ||
Glycine max | Orthologous gene family | many-to-many | GM01G36430 GM11G08960 | 2 | |
Tree-based ortholog | 1-to-many | GM04G00230 GM06G00275 GM01G36430 ... | 4 | ||
Anchor point | many-to-many | GM11G08960 GM01G36430 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM11G08960 GM01G36430 | 2 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR03G00300 GR09G26770 | 2 | |
Tree-based ortholog | 1-to-many | GR02G11670 GR09G26770 | 2 | ||
Anchor point | many-to-many | GR03G00300 GR02G20610 GR09G26770 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR02G11670 | 1 | ||
Lotus japonicus | Tree-based ortholog | 1-to-many | LJ1G041960 LJ2G028390 | 2 | |
Anchor point | many-to-1 | LJ1G041960 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G028390 | 1 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G255570 MD02G009610 MD05G019570 ... | 4 | |
Tree-based ortholog | 1-to-many | MD05G019570 MD00G512410 MD10G009190 ... | 5 | ||
Anchor point | many-to-many | MD10G009190 MD15G017040 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD02G009610 MD00G255570 | 2 | ||
Manihot esculenta | Orthologous gene family | many-to-1 | ME06708G00290 | 1 | |
Tree-based ortholog | 1-to-many | ME02943G01010 ME06708G00290 | 2 | ||
Anchor point | many-to-many | ME02943G01010 ME07520G03310 ME06512G01860 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME02943G01010 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT5G023790 MT8G074000 | 2 | |
Tree-based ortholog | 1-to-many | MT5G023790 MT8G074000 | 2 | ||
Anchor point | many-to-many | MT8G074000 MT5G023790 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT5G023790 | 1 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS06G51110 | 1 | |
Tree-based ortholog | 1-to-many | OS04G47580 OS06G51110 | 2 | ||
Anchor point | many-to-many | OS04G47580 OS06G51110 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS06G51110 | 1 | ||
Ostreococcus lucimarinus | Tree-based ortholog | 1-to-1 | OL01G06270 | 1 | |
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL01G06270 | 1 | ||
Physcomitrella patens | Orthologous gene family | many-to-many | PP00089G00550 PP00271G00070 | 2 | |
Tree-based ortholog | 1-to-many | PP00089G00550 PP00271G00070 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00271G00070 PP00089G00550 | 2 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT02G01000 PT05G25140 | 2 | |
Tree-based ortholog | 1-to-many | PT05G25140 PT02G01000 | 2 | ||
Anchor point | many-to-many | PT05G25140 PT09G16580 PT05G10000 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT05G25140 PT02G01000 | 2 | ||
Prunus persica | Orthologous gene family | many-to-1 | PPE_007G20130 | 1 | |
Tree-based ortholog | 1-to-many | PPE_008G19460 PPE_007G20130 | 2 | ||
Anchor point | many-to-many | PPE_007G20130 PPE_008G19460 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G20130 | 1 | ||
Ricinus communis | Orthologous gene family | many-to-1 | RC30170G06830 | 1 | |
Tree-based ortholog | 1-to-1 | RC30170G06830 | 1 | ||
Anchor point | many-to-many | RC29830G00500 RC30170G06830 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30170G06830 | 1 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL02G082820 SL04G082430 SL12G094600 | 3 | |
Tree-based ortholog | 1-to-many | SL04G082430 SL12G094600 | 2 | ||
Anchor point | many-to-many | SL12G094600 SL03G032190 SL04G082430 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL04G082430 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST02G026170 ST03G008870 ST04G035880 ... | 4 | |
Tree-based ortholog | 1-to-many | ST04G035880 ST12G027870 | 2 | ||
Anchor point | many-to-many | ST02G026170 ST02G009460 ST12G027870 ... | 5 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST04G035880 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP1G18300 TP5G31450 | 2 | |
Tree-based ortholog | 1-to-1 | TP1G18300 | 1 | ||
Anchor point | many-to-many | TP5G31450 TP7G33390 TP3G30950 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G18300 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-1 | TC0001G00640 | 1 | |
Tree-based ortholog | 1-to-1 | TC0008G05780 | 1 | ||
Anchor point | many-to-many | TC0002G04320 TC0008G05780 TC0001G00640 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0008G05780 | 1 | ||
Vitis vinifera | Orthologous gene family | many-to-many | VV03G04320 VV18G10480 | 2 | |
Tree-based ortholog | 1-to-1 | VV18G10480 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G10480 | 1 | ||
Zea mays | Orthologous gene family | many-to-many | ZM02G07050 ZM06G09820 ZM10G22400 | 3 | |
Tree-based ortholog | 1-to-many | ZM02G07050 ZM10G22400 ZM06G09820 | 3 | ||
Anchor point | many-to-many | ZM06G09820 ZM02G07050 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ZM10G22400 ZM02G07050 | 2 |