Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL1G00740
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G00740 | 1 |  |
| Tree-based ortholog | AL1G00740 | 1 | ||
| Anchor point | AL5G32230 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL1G00740 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-many | ATR_00001G03160 ATR_00001G03150 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ATR_00001G03160 ATR_00001G03150 | 2 | ||
| Arabidopsis thaliana | Orthologous gene family | 1-to-1 | AT1G01550 | 1 | |
| Tree-based ortholog | 1-to-1 | AT1G01550 | 1 | ||
| Anchor point | 1-to-many | AT3G61500 AT1G01550 AT4G01360 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G01550 | 1 | ||
| Beta vulgaris | Tree-based ortholog | 1-to-1 | BV1G06150 | 1 | |
| Anchor point | 1-to-1 | BV1G06150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV1G06150 | 1 | ||
| Brassica rapa | Tree-based ortholog | 1-to-1 | BR10G06230 | 1 | |
| Anchor point | 1-to-many | BR05G05500 BR10G06230 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR10G06230 | 1 | ||
| Capsella rubella | Tree-based ortholog | 1-to-1 | CRU_001G00630 | 1 | |
| Anchor point | 1-to-1 | CRU_001G00630 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G00630 | 1 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00184G00170 | 1 | |
| Citrullus lanatus | Tree-based ortholog | 1-to-many | CL05G01610 CL06G02310 | 2 | |
| Anchor point | 1-to-many | CL06G02310 CL05G01610 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL05G01610 | 1 | ||
| Citrus sinensis | Tree-based ortholog | 1-to-1 | CS00001G03480 | 1 | |
| Anchor point | 1-to-1 | CS00001G03480 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00001G03480 | 1 | ||
| Cucumis melo | Tree-based ortholog | 1-to-many | CM00006G01720 CM00047G00500 | 2 | |
| Anchor point | 1-to-many | CM00006G01720 CM00047G00500 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00006G01720 | 1 | ||
| Eucalyptus grandis | Tree-based ortholog | 1-to-1 | EG0004G19100 | 1 | |
| Anchor point | 1-to-1 | EG0004G19100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0004G19100 | 1 | ||
| Fragaria vesca | Tree-based ortholog | 1-to-1 | FV7G07250 | 1 | |
| Anchor point | 1-to-1 | FV7G07250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV7G07250 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-1 | GM07G07240 | 1 | |
| Tree-based ortholog | 1-to-many | GM11G30540 GM03G24390 GM18G17013 ... | 6 | ||
| Anchor point | 1-to-many | GM09G39170 GM07G07240 GM18G47160 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM09G39170 GM18G47160 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR07G10230 GR08G12000 | 2 | |
| Anchor point | 1-to-many | GR07G10230 GR04G15950 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR07G10230 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ1G034710 | 1 | |
| Anchor point | 1-to-1 | LJ1G034710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G034710 | 1 | ||
| Malus domestica | Tree-based ortholog | 1-to-many | MD01G005970 MD00G229560 MD00G088070 ... | 4 | |
| Anchor point | 1-to-many | MD07G011200 MD01G005970 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD07G011200 MD00G229560 MD01G005970 ... | 4 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-many | ME02658G00970 ME03581G01470 | 2 | |
| Anchor point | 1-to-many | ME02658G00970 ME03581G01470 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME03581G01470 ME02658G00970 | 2 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-many | MT8G028710 MT7G078700 | 2 | |
| Anchor point | 1-to-1 | MT7G078700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G078700 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS10G36950 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS10G36950 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00013G00620 PP00029G00280 PP00140G00220 ... | 5 | |
| Tree-based ortholog | 1-to-many | PP00405G00170 PP00166G00230 PP00013G00620 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00029G00280 PP00166G00230 PP00140G00220 ... | 5 | ||
| Populus trichocarpa | Tree-based ortholog | 1-to-many | PT02G16260 PT14G08860 | 2 | |
| Anchor point | 1-to-1 | PT14G08860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT14G08860 PT02G16260 | 2 | ||
| Prunus persica | Tree-based ortholog | 1-to-1 | PPE_002G17070 | 1 | |
| Anchor point | 1-to-1 | PPE_002G17070 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_002G17070 | 1 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC30174G03280 | 1 | |
| Anchor point | 1-to-1 | RC30174G03280 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30174G03280 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-many | SL10G012070 SL01G094950 | 2 | |
| Anchor point | 1-to-1 | SL01G094950 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL01G094950 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | 1-to-many | ST10G010180 ST01G032360 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST01G032360 | 1 | ||
| Thellungiella parvula | Tree-based ortholog | 1-to-1 | TP1G00770 | 1 | |
| Anchor point | 1-to-many | TP4G28140 TP6G00800 TP5G01900 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G00770 | 1 | ||
| Theobroma cacao | Tree-based ortholog | 1-to-1 | TC0001G35150 | 1 | |
| Anchor point | 1-to-1 | TC0001G35150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G35150 | 1 |