Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL0G09440
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL0G09440 AL4G26730 | 2 |  |
| Best-Hits-and-Inparalogs(BHI)family | AL4G26730 AL0G09440 | 2 | ||
| Tree-based ortholog | AL4G26730 AL0G09440 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ATR_00024G02160 | 1 | |
| Tree-based ortholog | many-to-1 | ATR_00029G04340 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT2G40080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | AT2G40080 | 1 | ||
| Tree-based ortholog | many-to-1 | AT2G40080 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-many | BV2G04350 BV2G04370 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | BV2G04370 BV2G04350 | 2 | ||
| Tree-based ortholog | many-to-many | BV2G04370 BV2G04350 | 2 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G20130 BR04G23800 BR05G05800 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | BR04G23800 BR03G20130 BR05G05800 | 3 | ||
| Tree-based ortholog | many-to-1 | BR04G23800 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-1 | CRU_004G21490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CRU_004G21490 | 1 | ||
| Tree-based ortholog | many-to-1 | CRU_004G21490 | 1 | ||
| Carica papaya | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CP00415G00020 | 1 | |
| Tree-based ortholog | many-to-1 | CP00415G00020 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL07G04110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CL07G04110 | 1 | ||
| Tree-based ortholog | many-to-1 | CL07G04110 | 1 | ||
| Citrus sinensis | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CS00026G01110 | 1 | |
| Tree-based ortholog | many-to-1 | CS00026G01110 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00075G00650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | CM00075G00650 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00075G00650 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0010G01890 EG0010G01920 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | EG0010G01920 EG0010G01890 | 2 | ||
| Tree-based ortholog | many-to-many | EG0010G01890 EG0010G01920 | 2 | ||
| Fragaria vesca | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | FV7G29440 | 1 | |
| Tree-based ortholog | many-to-many | FV0G15460 FV1G09930 | 2 | ||
| Glycine max | Orthologous gene family | many-to-many | GM11G35270 GM18G03130 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GM18G03130 GM11G35270 | 2 | ||
| Tree-based ortholog | many-to-many | GM18G03130 GM11G35270 GM14G06485 | 3 | ||
| Gossypium raimondii | Orthologous gene family | many-to-many | GR10G19810 GR11G28770 GR11G28780 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | GR11G28780 GR11G28770 | 2 | ||
| Tree-based ortholog | many-to-1 | GR11G28770 | 1 | ||
| Lotus japonicus | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | LJ4G036450 | 1 | |
| Tree-based ortholog | many-to-many | LJ6G016460 LJ4G036450 | 2 | ||
| Malus domestica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MD01G014680 | 1 | |
| Tree-based ortholog | many-to-many | MD00G329430 MD15G015530 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-many | ME08265G03220 ME10689G00820 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-many | ME08265G03220 ME10689G00820 | 2 | ||
| Tree-based ortholog | many-to-many | ME08265G03220 ME10689G00820 | 2 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT3G070490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | MT3G070490 | 1 | ||
| Tree-based ortholog | many-to-1 | MT3G070490 | 1 | ||
| Oryza sativa ssp. japonica | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | OS11G40610 | 1 | |
| Tree-based ortholog | many-to-many | OS03G29680 OS08G27870 OS08G27860 ... | 4 | ||
| Physcomitrella patens | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PP00180G00160 | 1 | |
| Tree-based ortholog | many-to-1 | PP00180G00160 | 1 | ||
| Populus trichocarpa | Orthologous gene family | many-to-1 | PT08G06820 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PT08G06820 | 1 | ||
| Tree-based ortholog | many-to-1 | PT08G06820 | 1 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_002G24000 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | PPE_002G24000 | 1 | ||
| Tree-based ortholog | many-to-1 | PPE_002G24000 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC28833G00050 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | RC28833G00050 | 1 | ||
| Tree-based ortholog | many-to-1 | RC28833G00050 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-many | SL06G051660 SL06G051680 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | SL06G051660 | 1 | ||
| Tree-based ortholog | many-to-many | SL06G051680 SL06G051660 | 2 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST06G014650 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ST06G014650 | 1 | ||
| Tree-based ortholog | many-to-many | ST06G014650 ST06G014620 | 2 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP4G22370 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TP4G22370 | 1 | ||
| Tree-based ortholog | many-to-1 | TP4G22370 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0010G01630 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | TC0010G01630 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0010G01630 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV13G10470 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | many-to-1 | VV13G10470 | 1 | ||
| Tree-based ortholog | many-to-1 | VV13G10470 | 1 | ||
| Zea mays | Best-Hits-and-Inparalogs(BHI)family | many-to-1 | ZM04G01870 | 1 | |
| Tree-based ortholog | many-to-many | ZM01G17900 ZM09G19520 ZM07G13290 ... | 4 |