Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D027993
Gene count gene family
5
Total coding gene count
1,012,693
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis thaliana27,41612.71%20%7.38
Arabidopsis lyrata32,67013.23%20%6.19
Capsella rubella26,52112.62%20%7.63
Brassica rapa40,97714.05%20%4.94
Thellungiella parvula25,69102.54%0%0
Carica papaya28,02702.77%0%0
Gossypium raimondii37,58703.71%0%0
Theobroma cacao29,48402.91%0%0
Citrus sinensis25,46702.51%0%0
Eucalyptus grandis36,44903.6%0%0
Cucumis melo27,51402.72%0%0
Citrullus lanatus23,47702.32%0%0
Prunus persica27,86402.75%0%0
Malus domestica63,54606.27%0%0
Fragaria vesca34,80903.44%0%0
Lotus japonicus29,59802.92%0%0
Medicago truncatula50,89305.03%0%0
Glycine max54,25705.36%0%0
Ricinus communis31,22103.08%0%0
Manihot esculenta30,74803.04%0%0
Populus trichocarpa41,43404.09%0%0
Vitis vinifera26,50402.62%0%0
Solanum lycopersicum34,81303.44%0%0
Solanum tuberosum35,08503.46%0%0
Beta vulgaris25,62502.53%0%0
Zea mays39,32303.88%0%0
Oryza sativa ssp. japonica40,73804.02%0%0
Amborella trichopoda26,93102.66%0%0
Physcomitrella patens32,40003.2%0%0
Ostreococcus lucimarinus7,80510.77%20%25.97
Chlamydomonas reinhardtii17,81901.76%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis260,08625.93%40%6.75
Camelineae386,60738.55%60%7.02
ND_Brassicaceae1266,66816.58%20%3.04
Brassicaceae5153,275415.14%80%5.28
Brassicales6181,302417.9%80%4.47
Malvales267,07106.62%0%0
ND_Malvids18248,373424.53%80%3.26
ND_Malvids29273,840427.04%80%2.96
Malvids10310,289430.64%80%2.61
Benincaseae250,99105.04%0%0
Maloideae291,41009.03%0%0
Rosaceae3126,219012.46%0%0
ND_Fabids15177,210017.5%0%0
Galegoids280,49107.95%0%0
Papilionoideae3134,748013.31%0%0
ND_Fabids28311,958030.8%0%0
Euphorbiaceae261,96906.12%0%0
Malpighiales3103,403010.21%0%0
Fabids11415,361041.02%0%0
Rosids121725,650471.66%80%1.12
Rosids22752,154474.27%80%1.08
Solanum269,89806.9%0%0
ND_Dicots24822,052481.17%80%0.99
Dicots25847,677483.71%80%0.96
Monocots280,06107.91%0%0
Angiosperms27927,738491.61%80%0.87
Magnoliophyta28954,669494.27%80%0.85
Embryophyta29987,069497.47%80%0.82
Chlorophyta225,62412.53%20%7.91
Viridiplantae311,012,6935100%100%1