Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D022789
Gene count gene family
6
Total coding gene count
1,012,693
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis thaliana27,41612.71%16.67%6.15
Arabidopsis lyrata32,67013.23%16.67%5.16
Capsella rubella26,52112.62%16.67%6.36
Brassica rapa40,97714.05%16.67%4.12
Thellungiella parvula25,69112.54%16.67%6.56
Carica papaya28,02702.77%0%0
Gossypium raimondii37,58703.71%0%0
Theobroma cacao29,48402.91%0%0
Citrus sinensis25,46702.51%0%0
Eucalyptus grandis36,44903.6%0%0
Cucumis melo27,51402.72%0%0
Citrullus lanatus23,47702.32%0%0
Prunus persica27,86402.75%0%0
Malus domestica63,54606.27%0%0
Fragaria vesca34,80903.44%0%0
Lotus japonicus29,59802.92%0%0
Medicago truncatula50,89305.03%0%0
Glycine max54,25705.36%0%0
Ricinus communis31,22103.08%0%0
Manihot esculenta30,74803.04%0%0
Populus trichocarpa41,43404.09%0%0
Vitis vinifera26,50402.62%0%0
Solanum lycopersicum34,81303.44%0%0
Solanum tuberosum35,08503.46%0%0
Beta vulgaris25,62502.53%0%0
Zea mays39,32313.88%16.67%4.3
Oryza sativa ssp. japonica40,73804.02%0%0
Amborella trichopoda26,93102.66%0%0
Physcomitrella patens32,40003.2%0%0
Ostreococcus lucimarinus7,80500.77%0%0
Chlamydomonas reinhardtii17,81901.76%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis260,08625.93%33.33%5.62
Camelineae386,60738.55%50%5.85
ND_Brassicaceae1266,66826.58%33.33%5.07
Brassicaceae5153,275515.14%83.33%5.5
Brassicales6181,302517.9%83.33%4.66
Malvales267,07106.62%0%0
ND_Malvids18248,373524.53%83.33%3.4
ND_Malvids29273,840527.04%83.33%3.08
Malvids10310,289530.64%83.33%2.72
Benincaseae250,99105.04%0%0
Maloideae291,41009.03%0%0
Rosaceae3126,219012.46%0%0
ND_Fabids15177,210017.5%0%0
Galegoids280,49107.95%0%0
Papilionoideae3134,748013.31%0%0
ND_Fabids28311,958030.8%0%0
Euphorbiaceae261,96906.12%0%0
Malpighiales3103,403010.21%0%0
Fabids11415,361041.02%0%0
Rosids121725,650571.66%83.33%1.16
Rosids22752,154574.27%83.33%1.12
Solanum269,89806.9%0%0
ND_Dicots24822,052581.17%83.33%1.03
Dicots25847,677583.71%83.33%1
Monocots280,06117.91%16.67%2.11
Angiosperms27927,738691.61%100%1.09
Magnoliophyta28954,669694.27%100%1.06
Embryophyta29987,069697.47%100%1.03
Chlorophyta225,62402.53%0%0
Viridiplantae311,012,6936100%100%1