Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D020027
Gene count gene family
7
Total coding gene count
1,012,693
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis thaliana27,41602.71%0%0
Arabidopsis lyrata32,67003.23%0%0
Capsella rubella26,52102.62%0%0
Brassica rapa40,97704.05%0%0
Thellungiella parvula25,69102.54%0%0
Carica papaya28,02712.77%14.29%5.16
Gossypium raimondii37,58703.71%0%0
Theobroma cacao29,48402.91%0%0
Citrus sinensis25,46702.51%0%0
Eucalyptus grandis36,44913.6%14.29%3.97
Cucumis melo27,51402.72%0%0
Citrullus lanatus23,47702.32%0%0
Prunus persica27,86412.75%14.29%5.2
Malus domestica63,54606.27%0%0
Fragaria vesca34,80903.44%0%0
Lotus japonicus29,59802.92%0%0
Medicago truncatula50,89305.03%0%0
Glycine max54,25725.36%28.57%5.33
Ricinus communis31,22103.08%0%0
Manihot esculenta30,74813.04%14.29%4.7
Populus trichocarpa41,43404.09%0%0
Vitis vinifera26,50402.62%0%0
Solanum lycopersicum34,81303.44%0%0
Solanum tuberosum35,08503.46%0%0
Beta vulgaris25,62512.53%14.29%5.65
Zea mays39,32303.88%0%0
Oryza sativa ssp. japonica40,73804.02%0%0
Amborella trichopoda26,93102.66%0%0
Physcomitrella patens32,40003.2%0%0
Ostreococcus lucimarinus7,80500.77%0%0
Chlamydomonas reinhardtii17,81901.76%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis260,08605.93%0%0
Camelineae386,60708.55%0%0
ND_Brassicaceae1266,66806.58%0%0
Brassicaceae5153,275015.14%0%0
Brassicales6181,302117.9%14.29%0.8
Malvales267,07106.62%0%0
ND_Malvids18248,373124.53%14.29%0.58
ND_Malvids29273,840127.04%14.29%0.53
Malvids10310,289230.64%28.57%0.93
Benincaseae250,99105.04%0%0
Maloideae291,41019.03%14.29%1.58
Rosaceae3126,219112.46%14.29%1.15
ND_Fabids15177,210117.5%14.29%0.82
Galegoids280,49107.95%0%0
Papilionoideae3134,748213.31%28.57%2.15
ND_Fabids28311,958330.8%42.86%1.39
Euphorbiaceae261,96916.12%14.29%2.33
Malpighiales3103,403110.21%14.29%1.4
Fabids11415,361441.02%57.14%1.39
Rosids121725,650671.66%85.71%1.2
Rosids22752,154674.27%85.71%1.15
Solanum269,89806.9%0%0
ND_Dicots24822,052681.17%85.71%1.06
Dicots25847,677783.71%100%1.19
Monocots280,06107.91%0%0
Angiosperms27927,738791.61%100%1.09
Magnoliophyta28954,669794.27%100%1.06
Embryophyta29987,069797.47%100%1.03
Chlorophyta225,62402.53%0%0
Viridiplantae311,012,6937100%100%1