Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D019519
Gene count gene family
7
Total coding gene count
1,012,693
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis thaliana27,41602.71%0%0
Arabidopsis lyrata32,67003.23%0%0
Capsella rubella26,52102.62%0%0
Brassica rapa40,97704.05%0%0
Thellungiella parvula25,69102.54%0%0
Carica papaya28,02712.77%14.29%5.16
Gossypium raimondii37,58703.71%0%0
Theobroma cacao29,48402.91%0%0
Citrus sinensis25,46702.51%0%0
Eucalyptus grandis36,44903.6%0%0
Cucumis melo27,51402.72%0%0
Citrullus lanatus23,47712.32%14.29%6.16
Prunus persica27,86402.75%0%0
Malus domestica63,54616.27%14.29%2.28
Fragaria vesca34,80903.44%0%0
Lotus japonicus29,59802.92%0%0
Medicago truncatula50,89305.03%0%0
Glycine max54,25705.36%0%0
Ricinus communis31,22103.08%0%0
Manihot esculenta30,74803.04%0%0
Populus trichocarpa41,43404.09%0%0
Vitis vinifera26,50412.62%14.29%5.45
Solanum lycopersicum34,81313.44%14.29%4.15
Solanum tuberosum35,08513.46%14.29%4.13
Beta vulgaris25,62502.53%0%0
Zea mays39,32313.88%14.29%3.68
Oryza sativa ssp. japonica40,73804.02%0%0
Amborella trichopoda26,93102.66%0%0
Physcomitrella patens32,40003.2%0%0
Ostreococcus lucimarinus7,80500.77%0%0
Chlamydomonas reinhardtii17,81901.76%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis260,08605.93%0%0
Camelineae386,60708.55%0%0
ND_Brassicaceae1266,66806.58%0%0
Brassicaceae5153,275015.14%0%0
Brassicales6181,302117.9%14.29%0.8
Malvales267,07106.62%0%0
ND_Malvids18248,373124.53%14.29%0.58
ND_Malvids29273,840127.04%14.29%0.53
Malvids10310,289130.64%14.29%0.47
Benincaseae250,99115.04%14.29%2.84
Maloideae291,41019.03%14.29%1.58
Rosaceae3126,219112.46%14.29%1.15
ND_Fabids15177,210217.5%28.57%1.63
Galegoids280,49107.95%0%0
Papilionoideae3134,748013.31%0%0
ND_Fabids28311,958230.8%28.57%0.93
Euphorbiaceae261,96906.12%0%0
Malpighiales3103,403010.21%0%0
Fabids11415,361241.02%28.57%0.7
Rosids121725,650371.66%42.86%0.6
Rosids22752,154474.27%57.14%0.77
Solanum269,89826.9%28.57%4.14
ND_Dicots24822,052681.17%85.71%1.06
Dicots25847,677683.71%85.71%1.02
Monocots280,06117.91%14.29%1.81
Angiosperms27927,738791.61%100%1.09
Magnoliophyta28954,669794.27%100%1.06
Embryophyta29987,069797.47%100%1.03
Chlorophyta225,62402.53%0%0
Viridiplantae311,012,6937100%100%1