Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D017803
Gene count gene family
9
Total coding gene count
1,012,693
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis thaliana27,41602.71%0%0
Arabidopsis lyrata32,67003.23%0%0
Capsella rubella26,52102.62%0%0
Brassica rapa40,97704.05%0%0
Thellungiella parvula25,69102.54%0%0
Carica papaya28,02702.77%0%0
Gossypium raimondii37,58713.71%11.11%2.99
Theobroma cacao29,48412.91%11.11%3.82
Citrus sinensis25,46702.51%0%0
Eucalyptus grandis36,44913.6%11.11%3.09
Cucumis melo27,51412.72%11.11%4.08
Citrullus lanatus23,47712.32%11.11%4.79
Prunus persica27,86402.75%0%0
Malus domestica63,54606.27%0%0
Fragaria vesca34,80903.44%0%0
Lotus japonicus29,59802.92%0%0
Medicago truncatula50,89315.03%11.11%2.21
Glycine max54,25705.36%0%0
Ricinus communis31,22113.08%11.11%3.61
Manihot esculenta30,74803.04%0%0
Populus trichocarpa41,43414.09%11.11%2.72
Vitis vinifera26,50402.62%0%0
Solanum lycopersicum34,81303.44%0%0
Solanum tuberosum35,08503.46%0%0
Beta vulgaris25,62502.53%0%0
Zea mays39,32313.88%11.11%2.86
Oryza sativa ssp. japonica40,73804.02%0%0
Amborella trichopoda26,93102.66%0%0
Physcomitrella patens32,40003.2%0%0
Ostreococcus lucimarinus7,80500.77%0%0
Chlamydomonas reinhardtii17,81901.76%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis260,08605.93%0%0
Camelineae386,60708.55%0%0
ND_Brassicaceae1266,66806.58%0%0
Brassicaceae5153,275015.14%0%0
Brassicales6181,302017.9%0%0
Malvales267,07126.62%22.22%3.36
ND_Malvids18248,373224.53%22.22%0.91
ND_Malvids29273,840227.04%22.22%0.82
Malvids10310,289330.64%33.33%1.09
Benincaseae250,99125.04%22.22%4.41
Maloideae291,41009.03%0%0
Rosaceae3126,219012.46%0%0
ND_Fabids15177,210217.5%22.22%1.27
Galegoids280,49117.95%11.11%1.4
Papilionoideae3134,748113.31%11.11%0.83
ND_Fabids28311,958330.8%33.33%1.08
Euphorbiaceae261,96916.12%11.11%1.82
Malpighiales3103,403210.21%22.22%2.18
Fabids11415,361541.02%55.56%1.35
Rosids121725,650871.66%88.89%1.24
Rosids22752,154874.27%88.89%1.2
Solanum269,89806.9%0%0
ND_Dicots24822,052881.17%88.89%1.1
Dicots25847,677883.71%88.89%1.06
Monocots280,06117.91%11.11%1.4
Angiosperms27927,738991.61%100%1.09
Magnoliophyta28954,669994.27%100%1.06
Embryophyta29987,069997.47%100%1.03
Chlorophyta225,62402.53%0%0
Viridiplantae311,012,6939100%100%1