Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO03D017740
- Gene count gene family
- 9
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Arabidopsis thaliana | 27,416 | 1 | 2.71% | 11.11% | 4.1 |
| Arabidopsis lyrata | 32,670 | 1 | 3.23% | 11.11% | 3.44 |
| Capsella rubella | 26,521 | 1 | 2.62% | 11.11% | 4.24 |
| Brassica rapa | 40,977 | 1 | 4.05% | 11.11% | 2.74 |
| Thellungiella parvula | 25,691 | 1 | 2.54% | 11.11% | 4.37 |
| Carica papaya | 28,027 | 0 | 2.77% | 0% | 0 |
| Gossypium raimondii | 37,587 | 0 | 3.71% | 0% | 0 |
| Theobroma cacao | 29,484 | 0 | 2.91% | 0% | 0 |
| Citrus sinensis | 25,467 | 0 | 2.51% | 0% | 0 |
| Eucalyptus grandis | 36,449 | 0 | 3.6% | 0% | 0 |
| Cucumis melo | 27,514 | 1 | 2.72% | 11.11% | 4.08 |
| Citrullus lanatus | 23,477 | 0 | 2.32% | 0% | 0 |
| Prunus persica | 27,864 | 0 | 2.75% | 0% | 0 |
| Malus domestica | 63,546 | 0 | 6.27% | 0% | 0 |
| Fragaria vesca | 34,809 | 0 | 3.44% | 0% | 0 |
| Lotus japonicus | 29,598 | 0 | 2.92% | 0% | 0 |
| Medicago truncatula | 50,893 | 0 | 5.03% | 0% | 0 |
| Glycine max | 54,257 | 0 | 5.36% | 0% | 0 |
| Ricinus communis | 31,221 | 0 | 3.08% | 0% | 0 |
| Manihot esculenta | 30,748 | 0 | 3.04% | 0% | 0 |
| Populus trichocarpa | 41,434 | 0 | 4.09% | 0% | 0 |
| Vitis vinifera | 26,504 | 0 | 2.62% | 0% | 0 |
| Solanum lycopersicum | 34,813 | 1 | 3.44% | 11.11% | 3.23 |
| Solanum tuberosum | 35,085 | 0 | 3.46% | 0% | 0 |
| Beta vulgaris | 25,625 | 0 | 2.53% | 0% | 0 |
| Zea mays | 39,323 | 0 | 3.88% | 0% | 0 |
| Oryza sativa ssp. japonica | 40,738 | 1 | 4.02% | 11.11% | 2.76 |
| Amborella trichopoda | 26,931 | 1 | 2.66% | 11.11% | 4.18 |
| Physcomitrella patens | 32,400 | 0 | 3.2% | 0% | 0 |
| Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
| Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Arabidopsis | 2 | 60,086 | 2 | 5.93% | 22.22% | 3.75 |
| Camelineae | 3 | 86,607 | 3 | 8.55% | 33.33% | 3.9 |
| ND_Brassicaceae1 | 2 | 66,668 | 2 | 6.58% | 22.22% | 3.38 |
| Brassicaceae | 5 | 153,275 | 5 | 15.14% | 55.56% | 3.67 |
| Brassicales | 6 | 181,302 | 5 | 17.9% | 55.56% | 3.1 |
| Malvales | 2 | 67,071 | 0 | 6.62% | 0% | 0 |
| ND_Malvids1 | 8 | 248,373 | 5 | 24.53% | 55.56% | 2.26 |
| ND_Malvids2 | 9 | 273,840 | 5 | 27.04% | 55.56% | 2.05 |
| Malvids | 10 | 310,289 | 5 | 30.64% | 55.56% | 1.81 |
| Benincaseae | 2 | 50,991 | 1 | 5.04% | 11.11% | 2.2 |
| Maloideae | 2 | 91,410 | 0 | 9.03% | 0% | 0 |
| Rosaceae | 3 | 126,219 | 0 | 12.46% | 0% | 0 |
| ND_Fabids1 | 5 | 177,210 | 1 | 17.5% | 11.11% | 0.63 |
| Galegoids | 2 | 80,491 | 0 | 7.95% | 0% | 0 |
| Papilionoideae | 3 | 134,748 | 0 | 13.31% | 0% | 0 |
| ND_Fabids2 | 8 | 311,958 | 1 | 30.8% | 11.11% | 0.36 |
| Euphorbiaceae | 2 | 61,969 | 0 | 6.12% | 0% | 0 |
| Malpighiales | 3 | 103,403 | 0 | 10.21% | 0% | 0 |
| Fabids | 11 | 415,361 | 1 | 41.02% | 11.11% | 0.27 |
| Rosids1 | 21 | 725,650 | 6 | 71.66% | 66.67% | 0.93 |
| Rosids | 22 | 752,154 | 6 | 74.27% | 66.67% | 0.9 |
| Solanum | 2 | 69,898 | 1 | 6.9% | 11.11% | 1.61 |
| ND_Dicots | 24 | 822,052 | 7 | 81.17% | 77.78% | 0.96 |
| Dicots | 25 | 847,677 | 7 | 83.71% | 77.78% | 0.93 |
| Monocots | 2 | 80,061 | 1 | 7.91% | 11.11% | 1.4 |
| Angiosperms | 27 | 927,738 | 8 | 91.61% | 88.89% | 0.97 |
| Magnoliophyta | 28 | 954,669 | 9 | 94.27% | 100% | 1.06 |
| Embryophyta | 29 | 987,069 | 9 | 97.47% | 100% | 1.03 |
| Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
| Viridiplantae | 31 | 1,012,693 | 9 | 100% | 100% | 1 |