Gene family expansion analysis   top

Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.

Gene family
ORTHO03D016992
Gene count gene family
9
Total coding gene count
1,012,693
Keywords

Organisms

Organism Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis thaliana27,41602.71%0%0
Arabidopsis lyrata32,67003.23%0%0
Capsella rubella26,52172.62%77.78%29.69
Brassica rapa40,97704.05%0%0
Thellungiella parvula25,69102.54%0%0
Carica papaya28,02702.77%0%0
Gossypium raimondii37,58703.71%0%0
Theobroma cacao29,48402.91%0%0
Citrus sinensis25,46702.51%0%0
Eucalyptus grandis36,44903.6%0%0
Cucumis melo27,51402.72%0%0
Citrullus lanatus23,47702.32%0%0
Prunus persica27,86402.75%0%0
Malus domestica63,54616.27%11.11%1.77
Fragaria vesca34,80903.44%0%0
Lotus japonicus29,59802.92%0%0
Medicago truncatula50,89305.03%0%0
Glycine max54,25705.36%0%0
Ricinus communis31,22103.08%0%0
Manihot esculenta30,74803.04%0%0
Populus trichocarpa41,43404.09%0%0
Vitis vinifera26,50402.62%0%0
Solanum lycopersicum34,81303.44%0%0
Solanum tuberosum35,08513.46%11.11%3.21
Beta vulgaris25,62502.53%0%0
Zea mays39,32303.88%0%0
Oryza sativa ssp. japonica40,73804.02%0%0
Amborella trichopoda26,93102.66%0%0
Physcomitrella patens32,40003.2%0%0
Ostreococcus lucimarinus7,80500.77%0%0
Chlamydomonas reinhardtii17,81901.76%0%0

Phylogenetic clades

Clade Num species Total genes Genes in family Percentage total Percentage family Ratio family vs. total
Arabidopsis260,08605.93%0%0
Camelineae386,60778.55%77.78%9.1
ND_Brassicaceae1266,66806.58%0%0
Brassicaceae5153,275715.14%77.78%5.14
Brassicales6181,302717.9%77.78%4.35
Malvales267,07106.62%0%0
ND_Malvids18248,373724.53%77.78%3.17
ND_Malvids29273,840727.04%77.78%2.88
Malvids10310,289730.64%77.78%2.54
Benincaseae250,99105.04%0%0
Maloideae291,41019.03%11.11%1.23
Rosaceae3126,219112.46%11.11%0.89
ND_Fabids15177,210117.5%11.11%0.63
Galegoids280,49107.95%0%0
Papilionoideae3134,748013.31%0%0
ND_Fabids28311,958130.8%11.11%0.36
Euphorbiaceae261,96906.12%0%0
Malpighiales3103,403010.21%0%0
Fabids11415,361141.02%11.11%0.27
Rosids121725,650871.66%88.89%1.24
Rosids22752,154874.27%88.89%1.2
Solanum269,89816.9%11.11%1.61
ND_Dicots24822,052981.17%100%1.23
Dicots25847,677983.71%100%1.19
Monocots280,06107.91%0%0
Angiosperms27927,738991.61%100%1.09
Magnoliophyta28954,669994.27%100%1.06
Embryophyta29987,069997.47%100%1.03
Chlorophyta225,62402.53%0%0
Viridiplantae311,012,6939100%100%1