Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D001803
- Gene count gene family
- 93
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 3 | 2.71% | 3.23% | 1.19 |
Arabidopsis lyrata | 32,670 | 4 | 3.23% | 4.3% | 1.33 |
Capsella rubella | 26,521 | 3 | 2.62% | 3.23% | 1.23 |
Brassica rapa | 40,977 | 7 | 4.05% | 7.53% | 1.86 |
Thellungiella parvula | 25,691 | 3 | 2.54% | 3.23% | 1.27 |
Carica papaya | 28,027 | 2 | 2.77% | 2.15% | 0.78 |
Gossypium raimondii | 37,587 | 5 | 3.71% | 5.38% | 1.45 |
Theobroma cacao | 29,484 | 2 | 2.91% | 2.15% | 0.74 |
Citrus sinensis | 25,467 | 2 | 2.51% | 2.15% | 0.86 |
Eucalyptus grandis | 36,449 | 5 | 3.6% | 5.38% | 1.49 |
Cucumis melo | 27,514 | 3 | 2.72% | 3.23% | 1.19 |
Citrullus lanatus | 23,477 | 2 | 2.32% | 2.15% | 0.93 |
Prunus persica | 27,864 | 1 | 2.75% | 1.08% | 0.39 |
Malus domestica | 63,546 | 5 | 6.27% | 5.38% | 0.86 |
Fragaria vesca | 34,809 | 3 | 3.44% | 3.23% | 0.94 |
Lotus japonicus | 29,598 | 3 | 2.92% | 3.23% | 1.11 |
Medicago truncatula | 50,893 | 3 | 5.03% | 3.23% | 0.64 |
Glycine max | 54,257 | 4 | 5.36% | 4.3% | 0.8 |
Ricinus communis | 31,221 | 2 | 3.08% | 2.15% | 0.7 |
Manihot esculenta | 30,748 | 4 | 3.04% | 4.3% | 1.41 |
Populus trichocarpa | 41,434 | 3 | 4.09% | 3.23% | 0.79 |
Vitis vinifera | 26,504 | 2 | 2.62% | 2.15% | 0.82 |
Solanum lycopersicum | 34,813 | 6 | 3.44% | 6.45% | 1.88 |
Solanum tuberosum | 35,085 | 4 | 3.46% | 4.3% | 1.24 |
Beta vulgaris | 25,625 | 2 | 2.53% | 2.15% | 0.85 |
Zea mays | 39,323 | 2 | 3.88% | 2.15% | 0.55 |
Oryza sativa ssp. japonica | 40,738 | 1 | 4.02% | 1.08% | 0.27 |
Amborella trichopoda | 26,931 | 1 | 2.66% | 1.08% | 0.41 |
Physcomitrella patens | 32,400 | 4 | 3.2% | 4.3% | 1.34 |
Ostreococcus lucimarinus | 7,805 | 1 | 0.77% | 1.08% | 1.4 |
Chlamydomonas reinhardtii | 17,819 | 1 | 1.76% | 1.08% | 0.61 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 7 | 5.93% | 7.53% | 1.27 |
Camelineae | 3 | 86,607 | 10 | 8.55% | 10.75% | 1.26 |
ND_Brassicaceae1 | 2 | 66,668 | 10 | 6.58% | 10.75% | 1.63 |
Brassicaceae | 5 | 153,275 | 20 | 15.14% | 21.51% | 1.42 |
Brassicales | 6 | 181,302 | 22 | 17.9% | 23.66% | 1.32 |
Malvales | 2 | 67,071 | 7 | 6.62% | 7.53% | 1.14 |
ND_Malvids1 | 8 | 248,373 | 29 | 24.53% | 31.18% | 1.27 |
ND_Malvids2 | 9 | 273,840 | 31 | 27.04% | 33.33% | 1.23 |
Malvids | 10 | 310,289 | 36 | 30.64% | 38.71% | 1.26 |
Benincaseae | 2 | 50,991 | 5 | 5.04% | 5.38% | 1.07 |
Maloideae | 2 | 91,410 | 6 | 9.03% | 6.45% | 0.71 |
Rosaceae | 3 | 126,219 | 9 | 12.46% | 9.68% | 0.78 |
ND_Fabids1 | 5 | 177,210 | 14 | 17.5% | 15.05% | 0.86 |
Galegoids | 2 | 80,491 | 6 | 7.95% | 6.45% | 0.81 |
Papilionoideae | 3 | 134,748 | 10 | 13.31% | 10.75% | 0.81 |
ND_Fabids2 | 8 | 311,958 | 24 | 30.8% | 25.81% | 0.84 |
Euphorbiaceae | 2 | 61,969 | 6 | 6.12% | 6.45% | 1.05 |
Malpighiales | 3 | 103,403 | 9 | 10.21% | 9.68% | 0.95 |
Fabids | 11 | 415,361 | 33 | 41.02% | 35.48% | 0.86 |
Rosids1 | 21 | 725,650 | 69 | 71.66% | 74.19% | 1.04 |
Rosids | 22 | 752,154 | 71 | 74.27% | 76.34% | 1.03 |
Solanum | 2 | 69,898 | 10 | 6.9% | 10.75% | 1.56 |
ND_Dicots | 24 | 822,052 | 81 | 81.17% | 87.1% | 1.07 |
Dicots | 25 | 847,677 | 83 | 83.71% | 89.25% | 1.07 |
Monocots | 2 | 80,061 | 3 | 7.91% | 3.23% | 0.41 |
Angiosperms | 27 | 927,738 | 86 | 91.61% | 92.47% | 1.01 |
Magnoliophyta | 28 | 954,669 | 87 | 94.27% | 93.55% | 0.99 |
Embryophyta | 29 | 987,069 | 91 | 97.47% | 97.85% | 1 |
Chlorophyta | 2 | 25,624 | 2 | 2.53% | 2.15% | 0.85 |
Viridiplantae | 31 | 1,012,693 | 93 | 100% | 100% | 1 |