Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000517
- Gene count gene family
- 251
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 0 | 2.71% | 0% | 0 |
Arabidopsis lyrata | 32,670 | 0 | 3.23% | 0% | 0 |
Capsella rubella | 26,521 | 1 | 2.62% | 0.4% | 0.15 |
Brassica rapa | 40,977 | 0 | 4.05% | 0% | 0 |
Thellungiella parvula | 25,691 | 0 | 2.54% | 0% | 0 |
Carica papaya | 28,027 | 0 | 2.77% | 0% | 0 |
Gossypium raimondii | 37,587 | 34 | 3.71% | 13.55% | 3.65 |
Theobroma cacao | 29,484 | 50 | 2.91% | 19.92% | 6.85 |
Citrus sinensis | 25,467 | 2 | 2.51% | 0.8% | 0.32 |
Eucalyptus grandis | 36,449 | 2 | 3.6% | 0.8% | 0.22 |
Cucumis melo | 27,514 | 27 | 2.72% | 10.76% | 3.96 |
Citrullus lanatus | 23,477 | 0 | 2.32% | 0% | 0 |
Prunus persica | 27,864 | 46 | 2.75% | 18.33% | 6.67 |
Malus domestica | 63,546 | 9 | 6.27% | 3.59% | 0.57 |
Fragaria vesca | 34,809 | 6 | 3.44% | 2.39% | 0.69 |
Lotus japonicus | 29,598 | 27 | 2.92% | 10.76% | 3.68 |
Medicago truncatula | 50,893 | 9 | 5.03% | 3.59% | 0.71 |
Glycine max | 54,257 | 0 | 5.36% | 0% | 0 |
Ricinus communis | 31,221 | 0 | 3.08% | 0% | 0 |
Manihot esculenta | 30,748 | 0 | 3.04% | 0% | 0 |
Populus trichocarpa | 41,434 | 32 | 4.09% | 12.75% | 3.12 |
Vitis vinifera | 26,504 | 0 | 2.62% | 0% | 0 |
Solanum lycopersicum | 34,813 | 1 | 3.44% | 0.4% | 0.12 |
Solanum tuberosum | 35,085 | 0 | 3.46% | 0% | 0 |
Beta vulgaris | 25,625 | 4 | 2.53% | 1.59% | 0.63 |
Zea mays | 39,323 | 0 | 3.88% | 0% | 0 |
Oryza sativa ssp. japonica | 40,738 | 0 | 4.02% | 0% | 0 |
Amborella trichopoda | 26,931 | 1 | 2.66% | 0.4% | 0.15 |
Physcomitrella patens | 32,400 | 0 | 3.2% | 0% | 0 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 0 | 5.93% | 0% | 0 |
Camelineae | 3 | 86,607 | 1 | 8.55% | 0.4% | 0.05 |
ND_Brassicaceae1 | 2 | 66,668 | 0 | 6.58% | 0% | 0 |
Brassicaceae | 5 | 153,275 | 1 | 15.14% | 0.4% | 0.03 |
Brassicales | 6 | 181,302 | 1 | 17.9% | 0.4% | 0.02 |
Malvales | 2 | 67,071 | 84 | 6.62% | 33.47% | 5.06 |
ND_Malvids1 | 8 | 248,373 | 85 | 24.53% | 33.86% | 1.38 |
ND_Malvids2 | 9 | 273,840 | 87 | 27.04% | 34.66% | 1.28 |
Malvids | 10 | 310,289 | 89 | 30.64% | 35.46% | 1.16 |
Benincaseae | 2 | 50,991 | 27 | 5.04% | 10.76% | 2.13 |
Maloideae | 2 | 91,410 | 55 | 9.03% | 21.91% | 2.43 |
Rosaceae | 3 | 126,219 | 61 | 12.46% | 24.3% | 1.95 |
ND_Fabids1 | 5 | 177,210 | 88 | 17.5% | 35.06% | 2 |
Galegoids | 2 | 80,491 | 36 | 7.95% | 14.34% | 1.8 |
Papilionoideae | 3 | 134,748 | 36 | 13.31% | 14.34% | 1.08 |
ND_Fabids2 | 8 | 311,958 | 124 | 30.8% | 49.4% | 1.6 |
Euphorbiaceae | 2 | 61,969 | 0 | 6.12% | 0% | 0 |
Malpighiales | 3 | 103,403 | 32 | 10.21% | 12.75% | 1.25 |
Fabids | 11 | 415,361 | 156 | 41.02% | 62.15% | 1.52 |
Rosids1 | 21 | 725,650 | 245 | 71.66% | 97.61% | 1.36 |
Rosids | 22 | 752,154 | 245 | 74.27% | 97.61% | 1.31 |
Solanum | 2 | 69,898 | 1 | 6.9% | 0.4% | 0.06 |
ND_Dicots | 24 | 822,052 | 246 | 81.17% | 98.01% | 1.21 |
Dicots | 25 | 847,677 | 250 | 83.71% | 99.6% | 1.19 |
Monocots | 2 | 80,061 | 0 | 7.91% | 0% | 0 |
Angiosperms | 27 | 927,738 | 250 | 91.61% | 99.6% | 1.09 |
Magnoliophyta | 28 | 954,669 | 251 | 94.27% | 100% | 1.06 |
Embryophyta | 29 | 987,069 | 251 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 251 | 100% | 100% | 1 |