Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000289
- Gene count gene family
- 393
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 12 | 2.71% | 3.05% | 1.13 |
Arabidopsis lyrata | 32,670 | 16 | 3.23% | 4.07% | 1.26 |
Capsella rubella | 26,521 | 11 | 2.62% | 2.8% | 1.07 |
Brassica rapa | 40,977 | 14 | 4.05% | 3.56% | 0.88 |
Thellungiella parvula | 25,691 | 13 | 2.54% | 3.31% | 1.3 |
Carica papaya | 28,027 | 10 | 2.77% | 2.54% | 0.92 |
Gossypium raimondii | 37,587 | 17 | 3.71% | 4.33% | 1.17 |
Theobroma cacao | 29,484 | 10 | 2.91% | 2.54% | 0.87 |
Citrus sinensis | 25,467 | 10 | 2.51% | 2.54% | 1.01 |
Eucalyptus grandis | 36,449 | 9 | 3.6% | 2.29% | 0.64 |
Cucumis melo | 27,514 | 12 | 2.72% | 3.05% | 1.12 |
Citrullus lanatus | 23,477 | 9 | 2.32% | 2.29% | 0.99 |
Prunus persica | 27,864 | 10 | 2.75% | 2.54% | 0.92 |
Malus domestica | 63,546 | 22 | 6.27% | 5.6% | 0.89 |
Fragaria vesca | 34,809 | 12 | 3.44% | 3.05% | 0.89 |
Lotus japonicus | 29,598 | 11 | 2.92% | 2.8% | 0.96 |
Medicago truncatula | 50,893 | 23 | 5.03% | 5.85% | 1.16 |
Glycine max | 54,257 | 32 | 5.36% | 8.14% | 1.52 |
Ricinus communis | 31,221 | 11 | 3.08% | 2.8% | 0.91 |
Manihot esculenta | 30,748 | 20 | 3.04% | 5.09% | 1.67 |
Populus trichocarpa | 41,434 | 16 | 4.09% | 4.07% | 1 |
Vitis vinifera | 26,504 | 11 | 2.62% | 2.8% | 1.07 |
Solanum lycopersicum | 34,813 | 13 | 3.44% | 3.31% | 0.96 |
Solanum tuberosum | 35,085 | 13 | 3.46% | 3.31% | 0.96 |
Beta vulgaris | 25,625 | 8 | 2.53% | 2.04% | 0.81 |
Zea mays | 39,323 | 19 | 3.88% | 4.83% | 1.24 |
Oryza sativa ssp. japonica | 40,738 | 11 | 4.02% | 2.8% | 0.7 |
Amborella trichopoda | 26,931 | 7 | 2.66% | 1.78% | 0.67 |
Physcomitrella patens | 32,400 | 10 | 3.2% | 2.54% | 0.79 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 1 | 1.76% | 0.25% | 0.14 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 28 | 5.93% | 7.12% | 1.2 |
Camelineae | 3 | 86,607 | 39 | 8.55% | 9.92% | 1.16 |
ND_Brassicaceae1 | 2 | 66,668 | 27 | 6.58% | 6.87% | 1.04 |
Brassicaceae | 5 | 153,275 | 66 | 15.14% | 16.79% | 1.11 |
Brassicales | 6 | 181,302 | 76 | 17.9% | 19.34% | 1.08 |
Malvales | 2 | 67,071 | 27 | 6.62% | 6.87% | 1.04 |
ND_Malvids1 | 8 | 248,373 | 103 | 24.53% | 26.21% | 1.07 |
ND_Malvids2 | 9 | 273,840 | 113 | 27.04% | 28.75% | 1.06 |
Malvids | 10 | 310,289 | 122 | 30.64% | 31.04% | 1.01 |
Benincaseae | 2 | 50,991 | 21 | 5.04% | 5.34% | 1.06 |
Maloideae | 2 | 91,410 | 32 | 9.03% | 8.14% | 0.9 |
Rosaceae | 3 | 126,219 | 44 | 12.46% | 11.2% | 0.9 |
ND_Fabids1 | 5 | 177,210 | 65 | 17.5% | 16.54% | 0.95 |
Galegoids | 2 | 80,491 | 34 | 7.95% | 8.65% | 1.09 |
Papilionoideae | 3 | 134,748 | 66 | 13.31% | 16.79% | 1.26 |
ND_Fabids2 | 8 | 311,958 | 131 | 30.8% | 33.33% | 1.08 |
Euphorbiaceae | 2 | 61,969 | 31 | 6.12% | 7.89% | 1.29 |
Malpighiales | 3 | 103,403 | 47 | 10.21% | 11.96% | 1.17 |
Fabids | 11 | 415,361 | 178 | 41.02% | 45.29% | 1.1 |
Rosids1 | 21 | 725,650 | 300 | 71.66% | 76.34% | 1.07 |
Rosids | 22 | 752,154 | 311 | 74.27% | 79.13% | 1.07 |
Solanum | 2 | 69,898 | 26 | 6.9% | 6.62% | 0.96 |
ND_Dicots | 24 | 822,052 | 337 | 81.17% | 85.75% | 1.06 |
Dicots | 25 | 847,677 | 345 | 83.71% | 87.79% | 1.05 |
Monocots | 2 | 80,061 | 30 | 7.91% | 7.63% | 0.96 |
Angiosperms | 27 | 927,738 | 375 | 91.61% | 95.42% | 1.04 |
Magnoliophyta | 28 | 954,669 | 382 | 94.27% | 97.2% | 1.03 |
Embryophyta | 29 | 987,069 | 392 | 97.47% | 99.75% | 1.02 |
Chlorophyta | 2 | 25,624 | 1 | 2.53% | 0.25% | 0.1 |
Viridiplantae | 31 | 1,012,693 | 393 | 100% | 100% | 1 |