Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000165
- Gene count gene family
- 617
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 17 | 2.71% | 2.76% | 1.02 |
Arabidopsis lyrata | 32,670 | 15 | 3.23% | 2.43% | 0.75 |
Capsella rubella | 26,521 | 16 | 2.62% | 2.59% | 0.99 |
Brassica rapa | 40,977 | 29 | 4.05% | 4.7% | 1.16 |
Thellungiella parvula | 25,691 | 15 | 2.54% | 2.43% | 0.96 |
Carica papaya | 28,027 | 15 | 2.77% | 2.43% | 0.88 |
Gossypium raimondii | 37,587 | 30 | 3.71% | 4.86% | 1.31 |
Theobroma cacao | 29,484 | 18 | 2.91% | 2.92% | 1 |
Citrus sinensis | 25,467 | 15 | 2.51% | 2.43% | 0.97 |
Eucalyptus grandis | 36,449 | 16 | 3.6% | 2.59% | 0.72 |
Cucumis melo | 27,514 | 17 | 2.72% | 2.76% | 1.01 |
Citrullus lanatus | 23,477 | 16 | 2.32% | 2.59% | 1.12 |
Prunus persica | 27,864 | 17 | 2.75% | 2.76% | 1 |
Malus domestica | 63,546 | 40 | 6.27% | 6.48% | 1.03 |
Fragaria vesca | 34,809 | 17 | 3.44% | 2.76% | 0.8 |
Lotus japonicus | 29,598 | 10 | 2.92% | 1.62% | 0.55 |
Medicago truncatula | 50,893 | 24 | 5.03% | 3.89% | 0.77 |
Glycine max | 54,257 | 46 | 5.36% | 7.46% | 1.39 |
Ricinus communis | 31,221 | 16 | 3.08% | 2.59% | 0.84 |
Manihot esculenta | 30,748 | 22 | 3.04% | 3.57% | 1.17 |
Populus trichocarpa | 41,434 | 31 | 4.09% | 5.02% | 1.23 |
Vitis vinifera | 26,504 | 20 | 2.62% | 3.24% | 1.24 |
Solanum lycopersicum | 34,813 | 16 | 3.44% | 2.59% | 0.75 |
Solanum tuberosum | 35,085 | 15 | 3.46% | 2.43% | 0.7 |
Beta vulgaris | 25,625 | 16 | 2.53% | 2.59% | 1.02 |
Zea mays | 39,323 | 32 | 3.88% | 5.19% | 1.34 |
Oryza sativa ssp. japonica | 40,738 | 19 | 4.02% | 3.08% | 0.77 |
Amborella trichopoda | 26,931 | 13 | 2.66% | 2.11% | 0.79 |
Physcomitrella patens | 32,400 | 17 | 3.2% | 2.76% | 0.86 |
Ostreococcus lucimarinus | 7,805 | 1 | 0.77% | 0.16% | 0.21 |
Chlamydomonas reinhardtii | 17,819 | 26 | 1.76% | 4.21% | 2.39 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 32 | 5.93% | 5.19% | 0.88 |
Camelineae | 3 | 86,607 | 48 | 8.55% | 7.78% | 0.91 |
ND_Brassicaceae1 | 2 | 66,668 | 44 | 6.58% | 7.13% | 1.08 |
Brassicaceae | 5 | 153,275 | 92 | 15.14% | 14.91% | 0.98 |
Brassicales | 6 | 181,302 | 107 | 17.9% | 17.34% | 0.97 |
Malvales | 2 | 67,071 | 48 | 6.62% | 7.78% | 1.18 |
ND_Malvids1 | 8 | 248,373 | 155 | 24.53% | 25.12% | 1.02 |
ND_Malvids2 | 9 | 273,840 | 170 | 27.04% | 27.55% | 1.02 |
Malvids | 10 | 310,289 | 186 | 30.64% | 30.15% | 0.98 |
Benincaseae | 2 | 50,991 | 33 | 5.04% | 5.35% | 1.06 |
Maloideae | 2 | 91,410 | 57 | 9.03% | 9.24% | 1.02 |
Rosaceae | 3 | 126,219 | 74 | 12.46% | 11.99% | 0.96 |
ND_Fabids1 | 5 | 177,210 | 107 | 17.5% | 17.34% | 0.99 |
Galegoids | 2 | 80,491 | 34 | 7.95% | 5.51% | 0.69 |
Papilionoideae | 3 | 134,748 | 80 | 13.31% | 12.97% | 0.97 |
ND_Fabids2 | 8 | 311,958 | 187 | 30.8% | 30.31% | 0.98 |
Euphorbiaceae | 2 | 61,969 | 38 | 6.12% | 6.16% | 1.01 |
Malpighiales | 3 | 103,403 | 69 | 10.21% | 11.18% | 1.1 |
Fabids | 11 | 415,361 | 256 | 41.02% | 41.49% | 1.01 |
Rosids1 | 21 | 725,650 | 442 | 71.66% | 71.64% | 1 |
Rosids | 22 | 752,154 | 462 | 74.27% | 74.88% | 1.01 |
Solanum | 2 | 69,898 | 31 | 6.9% | 5.02% | 0.73 |
ND_Dicots | 24 | 822,052 | 493 | 81.17% | 79.9% | 0.98 |
Dicots | 25 | 847,677 | 509 | 83.71% | 82.5% | 0.99 |
Monocots | 2 | 80,061 | 51 | 7.91% | 8.27% | 1.05 |
Angiosperms | 27 | 927,738 | 560 | 91.61% | 90.76% | 0.99 |
Magnoliophyta | 28 | 954,669 | 573 | 94.27% | 92.87% | 0.99 |
Embryophyta | 29 | 987,069 | 590 | 97.47% | 95.62% | 0.98 |
Chlorophyta | 2 | 25,624 | 27 | 2.53% | 4.38% | 1.73 |
Viridiplantae | 31 | 1,012,693 | 617 | 100% | 100% | 1 |