Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000114
- Gene count gene family
- 828
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 28 | 2.71% | 3.38% | 1.25 |
Arabidopsis lyrata | 32,670 | 29 | 3.23% | 3.5% | 1.08 |
Capsella rubella | 26,521 | 28 | 2.62% | 3.38% | 1.29 |
Brassica rapa | 40,977 | 45 | 4.05% | 5.43% | 1.34 |
Thellungiella parvula | 25,691 | 29 | 2.54% | 3.5% | 1.38 |
Carica papaya | 28,027 | 20 | 2.77% | 2.42% | 0.87 |
Gossypium raimondii | 37,587 | 44 | 3.71% | 5.31% | 1.43 |
Theobroma cacao | 29,484 | 21 | 2.91% | 2.54% | 0.87 |
Citrus sinensis | 25,467 | 20 | 2.51% | 2.42% | 0.96 |
Eucalyptus grandis | 36,449 | 26 | 3.6% | 3.14% | 0.87 |
Cucumis melo | 27,514 | 26 | 2.72% | 3.14% | 1.15 |
Citrullus lanatus | 23,477 | 26 | 2.32% | 3.14% | 1.35 |
Prunus persica | 27,864 | 19 | 2.75% | 2.29% | 0.83 |
Malus domestica | 63,546 | 47 | 6.27% | 5.68% | 0.91 |
Fragaria vesca | 34,809 | 17 | 3.44% | 2.05% | 0.6 |
Lotus japonicus | 29,598 | 15 | 2.92% | 1.81% | 0.62 |
Medicago truncatula | 50,893 | 33 | 5.03% | 3.99% | 0.79 |
Glycine max | 54,257 | 67 | 5.36% | 8.09% | 1.51 |
Ricinus communis | 31,221 | 23 | 3.08% | 2.78% | 0.9 |
Manihot esculenta | 30,748 | 35 | 3.04% | 4.23% | 1.39 |
Populus trichocarpa | 41,434 | 39 | 4.09% | 4.71% | 1.15 |
Vitis vinifera | 26,504 | 25 | 2.62% | 3.02% | 1.15 |
Solanum lycopersicum | 34,813 | 27 | 3.44% | 3.26% | 0.95 |
Solanum tuberosum | 35,085 | 29 | 3.46% | 3.5% | 1.01 |
Beta vulgaris | 25,625 | 20 | 2.53% | 2.42% | 0.96 |
Zea mays | 39,323 | 29 | 3.88% | 3.5% | 0.9 |
Oryza sativa ssp. japonica | 40,738 | 29 | 4.02% | 3.5% | 0.87 |
Amborella trichopoda | 26,931 | 14 | 2.66% | 1.69% | 0.64 |
Physcomitrella patens | 32,400 | 18 | 3.2% | 2.17% | 0.68 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 57 | 5.93% | 6.88% | 1.16 |
Camelineae | 3 | 86,607 | 85 | 8.55% | 10.27% | 1.2 |
ND_Brassicaceae1 | 2 | 66,668 | 74 | 6.58% | 8.94% | 1.36 |
Brassicaceae | 5 | 153,275 | 159 | 15.14% | 19.2% | 1.27 |
Brassicales | 6 | 181,302 | 179 | 17.9% | 21.62% | 1.21 |
Malvales | 2 | 67,071 | 65 | 6.62% | 7.85% | 1.19 |
ND_Malvids1 | 8 | 248,373 | 244 | 24.53% | 29.47% | 1.2 |
ND_Malvids2 | 9 | 273,840 | 264 | 27.04% | 31.88% | 1.18 |
Malvids | 10 | 310,289 | 290 | 30.64% | 35.02% | 1.14 |
Benincaseae | 2 | 50,991 | 52 | 5.04% | 6.28% | 1.25 |
Maloideae | 2 | 91,410 | 66 | 9.03% | 7.97% | 0.88 |
Rosaceae | 3 | 126,219 | 83 | 12.46% | 10.02% | 0.8 |
ND_Fabids1 | 5 | 177,210 | 135 | 17.5% | 16.3% | 0.93 |
Galegoids | 2 | 80,491 | 48 | 7.95% | 5.8% | 0.73 |
Papilionoideae | 3 | 134,748 | 115 | 13.31% | 13.89% | 1.04 |
ND_Fabids2 | 8 | 311,958 | 250 | 30.8% | 30.19% | 0.98 |
Euphorbiaceae | 2 | 61,969 | 58 | 6.12% | 7% | 1.14 |
Malpighiales | 3 | 103,403 | 97 | 10.21% | 11.71% | 1.15 |
Fabids | 11 | 415,361 | 347 | 41.02% | 41.91% | 1.02 |
Rosids1 | 21 | 725,650 | 637 | 71.66% | 76.93% | 1.07 |
Rosids | 22 | 752,154 | 662 | 74.27% | 79.95% | 1.08 |
Solanum | 2 | 69,898 | 56 | 6.9% | 6.76% | 0.98 |
ND_Dicots | 24 | 822,052 | 718 | 81.17% | 86.71% | 1.07 |
Dicots | 25 | 847,677 | 738 | 83.71% | 89.13% | 1.06 |
Monocots | 2 | 80,061 | 58 | 7.91% | 7% | 0.88 |
Angiosperms | 27 | 927,738 | 796 | 91.61% | 96.14% | 1.05 |
Magnoliophyta | 28 | 954,669 | 810 | 94.27% | 97.83% | 1.04 |
Embryophyta | 29 | 987,069 | 828 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 828 | 100% | 100% | 1 |