Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000099
- Gene count gene family
- 1002
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 25 | 2.71% | 2.5% | 0.92 |
Arabidopsis lyrata | 32,670 | 26 | 3.23% | 2.59% | 0.8 |
Capsella rubella | 26,521 | 25 | 2.62% | 2.5% | 0.95 |
Brassica rapa | 40,977 | 36 | 4.05% | 3.59% | 0.89 |
Thellungiella parvula | 25,691 | 21 | 2.54% | 2.1% | 0.83 |
Carica papaya | 28,027 | 20 | 2.77% | 2% | 0.72 |
Gossypium raimondii | 37,587 | 31 | 3.71% | 3.09% | 0.83 |
Theobroma cacao | 29,484 | 35 | 2.91% | 3.49% | 1.2 |
Citrus sinensis | 25,467 | 26 | 2.51% | 2.59% | 1.03 |
Eucalyptus grandis | 36,449 | 92 | 3.6% | 9.18% | 2.55 |
Cucumis melo | 27,514 | 18 | 2.72% | 1.8% | 0.66 |
Citrullus lanatus | 23,477 | 15 | 2.32% | 1.5% | 0.65 |
Prunus persica | 27,864 | 36 | 2.75% | 3.59% | 1.31 |
Malus domestica | 63,546 | 78 | 6.27% | 7.78% | 1.24 |
Fragaria vesca | 34,809 | 36 | 3.44% | 3.59% | 1.04 |
Lotus japonicus | 29,598 | 13 | 2.92% | 1.3% | 0.45 |
Medicago truncatula | 50,893 | 80 | 5.03% | 7.98% | 1.59 |
Glycine max | 54,257 | 59 | 5.36% | 5.89% | 1.1 |
Ricinus communis | 31,221 | 14 | 3.08% | 1.4% | 0.45 |
Manihot esculenta | 30,748 | 32 | 3.04% | 3.19% | 1.05 |
Populus trichocarpa | 41,434 | 70 | 4.09% | 6.99% | 1.71 |
Vitis vinifera | 26,504 | 27 | 2.62% | 2.69% | 1.03 |
Solanum lycopersicum | 34,813 | 24 | 3.44% | 2.4% | 0.7 |
Solanum tuberosum | 35,085 | 30 | 3.46% | 2.99% | 0.86 |
Beta vulgaris | 25,625 | 18 | 2.53% | 1.8% | 0.71 |
Zea mays | 39,323 | 41 | 3.88% | 4.09% | 1.05 |
Oryza sativa ssp. japonica | 40,738 | 53 | 4.02% | 5.29% | 1.32 |
Amborella trichopoda | 26,931 | 17 | 2.66% | 1.7% | 0.64 |
Physcomitrella patens | 32,400 | 4 | 3.2% | 0.4% | 0.13 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 0 | 1.76% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 51 | 5.93% | 5.09% | 0.86 |
Camelineae | 3 | 86,607 | 76 | 8.55% | 7.58% | 0.89 |
ND_Brassicaceae1 | 2 | 66,668 | 57 | 6.58% | 5.69% | 0.86 |
Brassicaceae | 5 | 153,275 | 133 | 15.14% | 13.27% | 0.88 |
Brassicales | 6 | 181,302 | 153 | 17.9% | 15.27% | 0.85 |
Malvales | 2 | 67,071 | 66 | 6.62% | 6.59% | 1 |
ND_Malvids1 | 8 | 248,373 | 219 | 24.53% | 21.86% | 0.89 |
ND_Malvids2 | 9 | 273,840 | 245 | 27.04% | 24.45% | 0.9 |
Malvids | 10 | 310,289 | 337 | 30.64% | 33.63% | 1.1 |
Benincaseae | 2 | 50,991 | 33 | 5.04% | 3.29% | 0.65 |
Maloideae | 2 | 91,410 | 114 | 9.03% | 11.38% | 1.26 |
Rosaceae | 3 | 126,219 | 150 | 12.46% | 14.97% | 1.2 |
ND_Fabids1 | 5 | 177,210 | 183 | 17.5% | 18.26% | 1.04 |
Galegoids | 2 | 80,491 | 93 | 7.95% | 9.28% | 1.17 |
Papilionoideae | 3 | 134,748 | 152 | 13.31% | 15.17% | 1.14 |
ND_Fabids2 | 8 | 311,958 | 335 | 30.8% | 33.43% | 1.09 |
Euphorbiaceae | 2 | 61,969 | 46 | 6.12% | 4.59% | 0.75 |
Malpighiales | 3 | 103,403 | 116 | 10.21% | 11.58% | 1.13 |
Fabids | 11 | 415,361 | 451 | 41.02% | 45.01% | 1.1 |
Rosids1 | 21 | 725,650 | 788 | 71.66% | 78.64% | 1.1 |
Rosids | 22 | 752,154 | 815 | 74.27% | 81.34% | 1.1 |
Solanum | 2 | 69,898 | 54 | 6.9% | 5.39% | 0.78 |
ND_Dicots | 24 | 822,052 | 869 | 81.17% | 86.73% | 1.07 |
Dicots | 25 | 847,677 | 887 | 83.71% | 88.52% | 1.06 |
Monocots | 2 | 80,061 | 94 | 7.91% | 9.38% | 1.19 |
Angiosperms | 27 | 927,738 | 981 | 91.61% | 97.9% | 1.07 |
Magnoliophyta | 28 | 954,669 | 998 | 94.27% | 99.6% | 1.06 |
Embryophyta | 29 | 987,069 | 1,002 | 97.47% | 100% | 1.03 |
Chlorophyta | 2 | 25,624 | 0 | 2.53% | 0% | 0 |
Viridiplantae | 31 | 1,012,693 | 1,002 | 100% | 100% | 1 |