Gene family expansion analysis
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM03D000079
- Gene count gene family
- 1135
- Total coding gene count
- 1,012,693
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Arabidopsis thaliana | 27,416 | 6 | 2.71% | 0.53% | 0.2 |
Arabidopsis lyrata | 32,670 | 0 | 3.23% | 0% | 0 |
Capsella rubella | 26,521 | 2 | 2.62% | 0.18% | 0.07 |
Brassica rapa | 40,977 | 12 | 4.05% | 1.06% | 0.26 |
Thellungiella parvula | 25,691 | 7 | 2.54% | 0.62% | 0.24 |
Carica papaya | 28,027 | 17 | 2.77% | 1.5% | 0.54 |
Gossypium raimondii | 37,587 | 9 | 3.71% | 0.79% | 0.21 |
Theobroma cacao | 29,484 | 383 | 2.91% | 33.74% | 11.59 |
Citrus sinensis | 25,467 | 7 | 2.51% | 0.62% | 0.25 |
Eucalyptus grandis | 36,449 | 25 | 3.6% | 2.2% | 0.61 |
Cucumis melo | 27,514 | 15 | 2.72% | 1.32% | 0.49 |
Citrullus lanatus | 23,477 | 0 | 2.32% | 0% | 0 |
Prunus persica | 27,864 | 19 | 2.75% | 1.67% | 0.61 |
Malus domestica | 63,546 | 14 | 6.27% | 1.23% | 0.2 |
Fragaria vesca | 34,809 | 65 | 3.44% | 5.73% | 1.67 |
Lotus japonicus | 29,598 | 153 | 2.92% | 13.48% | 4.62 |
Medicago truncatula | 50,893 | 180 | 5.03% | 15.86% | 3.15 |
Glycine max | 54,257 | 10 | 5.36% | 0.88% | 0.16 |
Ricinus communis | 31,221 | 6 | 3.08% | 0.53% | 0.17 |
Manihot esculenta | 30,748 | 2 | 3.04% | 0.18% | 0.06 |
Populus trichocarpa | 41,434 | 8 | 4.09% | 0.7% | 0.17 |
Vitis vinifera | 26,504 | 9 | 2.62% | 0.79% | 0.3 |
Solanum lycopersicum | 34,813 | 92 | 3.44% | 8.11% | 2.36 |
Solanum tuberosum | 35,085 | 24 | 3.46% | 2.11% | 0.61 |
Beta vulgaris | 25,625 | 20 | 2.53% | 1.76% | 0.7 |
Zea mays | 39,323 | 1 | 3.88% | 0.09% | 0.02 |
Oryza sativa ssp. japonica | 40,738 | 8 | 4.02% | 0.7% | 0.17 |
Amborella trichopoda | 26,931 | 4 | 2.66% | 0.35% | 0.13 |
Physcomitrella patens | 32,400 | 32 | 3.2% | 2.82% | 0.88 |
Ostreococcus lucimarinus | 7,805 | 0 | 0.77% | 0% | 0 |
Chlamydomonas reinhardtii | 17,819 | 5 | 1.76% | 0.44% | 0.25 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Arabidopsis | 2 | 60,086 | 6 | 5.93% | 0.53% | 0.09 |
Camelineae | 3 | 86,607 | 8 | 8.55% | 0.7% | 0.08 |
ND_Brassicaceae1 | 2 | 66,668 | 19 | 6.58% | 1.67% | 0.25 |
Brassicaceae | 5 | 153,275 | 27 | 15.14% | 2.38% | 0.16 |
Brassicales | 6 | 181,302 | 44 | 17.9% | 3.88% | 0.22 |
Malvales | 2 | 67,071 | 392 | 6.62% | 34.54% | 5.22 |
ND_Malvids1 | 8 | 248,373 | 436 | 24.53% | 38.41% | 1.57 |
ND_Malvids2 | 9 | 273,840 | 443 | 27.04% | 39.03% | 1.44 |
Malvids | 10 | 310,289 | 468 | 30.64% | 41.23% | 1.35 |
Benincaseae | 2 | 50,991 | 15 | 5.04% | 1.32% | 0.26 |
Maloideae | 2 | 91,410 | 33 | 9.03% | 2.91% | 0.32 |
Rosaceae | 3 | 126,219 | 98 | 12.46% | 8.63% | 0.69 |
ND_Fabids1 | 5 | 177,210 | 113 | 17.5% | 9.96% | 0.57 |
Galegoids | 2 | 80,491 | 333 | 7.95% | 29.34% | 3.69 |
Papilionoideae | 3 | 134,748 | 343 | 13.31% | 30.22% | 2.27 |
ND_Fabids2 | 8 | 311,958 | 456 | 30.8% | 40.18% | 1.3 |
Euphorbiaceae | 2 | 61,969 | 8 | 6.12% | 0.7% | 0.11 |
Malpighiales | 3 | 103,403 | 16 | 10.21% | 1.41% | 0.14 |
Fabids | 11 | 415,361 | 472 | 41.02% | 41.59% | 1.01 |
Rosids1 | 21 | 725,650 | 940 | 71.66% | 82.82% | 1.16 |
Rosids | 22 | 752,154 | 949 | 74.27% | 83.61% | 1.13 |
Solanum | 2 | 69,898 | 116 | 6.9% | 10.22% | 1.48 |
ND_Dicots | 24 | 822,052 | 1,065 | 81.17% | 93.83% | 1.16 |
Dicots | 25 | 847,677 | 1,085 | 83.71% | 95.59% | 1.14 |
Monocots | 2 | 80,061 | 9 | 7.91% | 0.79% | 0.1 |
Angiosperms | 27 | 927,738 | 1,094 | 91.61% | 96.39% | 1.05 |
Magnoliophyta | 28 | 954,669 | 1,098 | 94.27% | 96.74% | 1.03 |
Embryophyta | 29 | 987,069 | 1,130 | 97.47% | 99.56% | 1.02 |
Chlorophyta | 2 | 25,624 | 5 | 2.53% | 0.44% | 0.17 |
Viridiplantae | 31 | 1,012,693 | 1,135 | 100% | 100% | 1 |